RetrogeneDB ID: | retro_etel_1312 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_245369:12037..12432(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL27 | ||
Ensembl ID: | ENSETEG00000002811 | ||
Aliases: | None | ||
Description: | ribosomal protein L27 [Source:HGNC Symbol;Acc:10328] |
Percent Identity: | 76.26 % |
Parental protein coverage: | 99.26 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | GKFMKPGKVVLVLAGR-YSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKS |
GKFMKPGKVVLVLA...YSGRK.VI.K.IDD.TSDRP.SHALVA.I.RYPRKVTAAMGK.K..KRSK.K. | |
Retrocopy | GKFMKPGKVVLVLADV<YSGRKIVIMKHIDDSTSDRPDSHALVAVIHRYPRKVTAAMGKEKATKRSKTKC |
Parental | FVKVYNYNHL-MPTRYSVDIPLDK-TVVNKDVFRDPALKRKA-RREAKVKFEERYKTGKNKWFFQKLRF |
.VKV..YN....P.R.SVDIPLDK..VVNKDVFRDPALKR.A..REA.VKF..RYKTGKNK.FFQKLRF | |
Retrocopy | LVKV--YNYN<SPSRCSVDIPLDK<NVVNKDVFRDPALKRRA<HREAEVKFGGRYKTGKNKRFFQKLRF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |