RetrogeneDB ID: | retro_ttru_372 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_2050:23962..24501(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSTTRG00000000205 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 88.95 % |
Parental protein coverage: | 89.55 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MGKGDP-KKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKV |
M.KGDP.KKPKGKMSAYAFFVQ.CREEHKKKNPEVP.NFAEFS.KCSE..KTMS.KEKSKF.EMAKADKV | |
Retrocopy | MAKGDP<KKPKGKMSAYAFFVQMCREEHKKKNPEVPDNFAEFSNKCSEW*KTMSWKEKSKFNEMAKADKV |
Parental | RYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEK |
.YDREMKDYG.AKGGKKKKD.NAPKRPPSGFFLFCSEFRPK.KSTN.GI.IGDVAKKLGE.WNNLSDSEK | |
Retrocopy | LYDREMKDYGLAKGGKKKKDSNAPKRPPSGFFLFCSEFRPKVKSTNLGIFIGDVAKKLGEIWNNLSDSEK |
Parental | QPYINKAAKLKEKYEKDVADYKSKGKFDGVKGPAKVARKKV |
QPYI.KAAKLKEKYEKDV.DYKSKGKFDG.KGP.KVARKKV | |
Retrocopy | QPYIKKAAKLKEKYEKDVSDYKSKGKFDGAKGPVKVARKKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |