RetrogeneDB ID: | retro_chof_2346 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_67471:820..1445(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSCHOG00000002798 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:HGNC Symbol;Acc:12855] |
Percent Identity: | 76.78 % |
Parental protein coverage: | 90.83 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 3 |
Parental | MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVV-GARRSSWRVVSSIEQKT |
MDKNELVQKAKLA.Q.E.YDDM.ACMKS...QGAELS.......SVA..NVV.G...SSW.V..SIEQKT | |
Retrocopy | MDKNELVQKAKLADQSE*YDDMTACMKS*IGQGAELSXXXXDPFSVA**NVV>GTLSSSWMVI*SIEQKT |
Parental | EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKX |
EGA.KK.QM..EYREKIETELRDICNDVL.LLEKFLIPNASQAESKVFYLKMKGD.Y.YLA..AAGDDK. | |
Retrocopy | EGAKKK*QMT*EYREKIETELRDICNDVLCLLEKFLIPNASQAESKVFYLKMKGDHYCYLADIAAGDDKK |
Parental | XIVDQSQQAYQEAFEISKKE-MQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTA-FDEAIAELDTLS |
..VDQSQQAYQEAFEISKKE..QPTH.IRL.L.LN.SVFY.EILNS.EKACS..KTA.FDEA.A.LDT.S | |
Retrocopy | GTVDQSQQAYQEAFEISKKE<KQPTHAIRLDLTLNISVFYHEILNSLEKACSFPKTA>FDEATADLDTSS |
Parental | E |
E | |
Retrocopy | E |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |