RetrogeneDB ID: | retro_chof_352 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | GeneScaffold_8105:594..1160(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAB | ||
Ensembl ID: | ENSCHOG00000005782 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:HGNC Symbol;Acc:12849] |
Percent Identity: | 62.31 % |
Parental protein coverage: | 79.27 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | VSYKNVVGARRSSWRVISSIEQKTERNEKKQQMGK-EYREKIEAELQDICN-DVLELL-DKYLIPNATQP |
........A.RSS..V.SS.EQ......KKQQ.....YREKIE.EL..I...DVL.LL..K.LI..A.Q. | |
Retrocopy | IFFQLLIKAHRSSQSVLSSTEQR----RKKQQTAQ<KYREKIETELRNISM<DVLSLL<EKFLILSASQA |
Parental | ESKVFYLKMKGDYFRYLSEVASGDS-KQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEI |
ESKVFYLKMKGD...YL.E.A.G...K...V..SQQAYQ.AF.ISK.E.QP.HPIRLGLALNFSVF.YEI | |
Retrocopy | ESKVFYLKMKGDNYPYLAEIATGNK<KKGIVDQSQQAYQKAFKISKRELQPAHPIRLGLALNFSVFSYEI |
Parental | LNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTXXTSETQGDEREAG |
LN..EK.CSLAKTAFD.AIAEL.TL..E.YKD..LIMQLLRDNLT..T...Q.DE.EAG | |
Retrocopy | LNFLEKSCSLAKTAFDDAIAELETLS-ELYKDHKLIMQLLRDNLTM*TWDIQRDEVEAG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |