RetrogeneDB ID: | retro_chof_292 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | GeneScaffold_6359:1945..2559(-) | ||
Located in intron of: | ENSCHOG00000009001 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSCHOG00000002798 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:HGNC Symbol;Acc:12855] |
Percent Identity: | 78.47 % |
Parental protein coverage: | 89.96 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MDKNELVQKA-KLAEQAERYDDMAACMKSV-TEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQK |
MDKNELVQKA.KLAEQ.E.YDDMA.CMKSV..EQGAELS.EERNL.SVAYKN..GA..SSWRV.SSIEQK | |
Retrocopy | MDKNELVQKA>KLAEQGE*YDDMAVCMKSV<NEQGAELSSEERNLVSVAYKNAIGAHSSSWRVISSIEQK |
Parental | TEGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDK |
.EGA..KQQMA.EYREK.ETEL.DI..DVLSL.EKFLIP.ASQ.ESKV.YLKMKGDYY.YLA.VAAG..K | |
Retrocopy | MEGAKNKQQMAGEYREKTETELTDIY-DVLSLFEKFLIPSASQVESKVSYLKMKGDYYHYLATVAAGNGK |
Parental | XXIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDE-AIAELDTL |
..I..Q.QQAYQEAFEISKKE..P.HP..LG.AL..SV.YYEILNSPEKACSLAKTAFDE.A.AELDTL | |
Retrocopy | KGIMHQLQQAYQEAFEISKKET*PMHPV*LGPALKCSVVYYEILNSPEKACSLAKTAFDE<ATAELDTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |