Parental gene:

YWHAZ, ENSCHOG00000002798

Aliases:None
Description:tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:HGNC Symbol;Acc:12855]
Organism:Sloth (Choloepus hoffmanni)
Coordinates:GeneScaffold_5717:4101..19976(-)


>ENSCHOG00000002798
ATGGATAAAAATGAGCTGGTGCAGAAGGCCAAACTGGCCGAGCAGGCTGAGCGATATGATGACATGGCAGCCTGCATGAA
GTCTGTAACTGAGCAAGGAGCTGAATTATCCAATGAGGAGAGGAATCTTCTCTCAGTTGCTTATAAAAATGTTGTAGGAG
CTCGTAGGTCATCTTGGAGGGTCGTCTCAAGTATTGAGCAAAAGACAGAAGGTGCTGAGAAAAAACAGCAGATGGCTCGA
GAATACAGAGAGAAAATTGAGACCGAGCTCAGAGATATCTGCAACGATGTACTGTCTCTTTTGGAAAAGTTCTTGATCCC
CAATGCCTCACAAGCAGAGAGCAAAGTCTTCTATTTGAAAATGAAAGGAGACTACTATCGCTACTTGGCTGAGGTTGCTG
CTGGTGATGACAAGNNNNGGATTGTGGATCAGTCACAACAAGCATACCAAGAAGCATTTGAAATCAGCAAAAAGGAAATG
CAACCTACGCATCCTATCAGATTGGGTCTAGCCCTTAACTTTTCTGTGTTCTATTATGAGATTCTGAACTCCCCAGAGAA
AGCCTGCTCTCTTGCAAAGACAGCTTTTGATGAAGCCATTGCTGAACTTGATACATTAAGTGAAGAGTCATTGGGGGACT
CGGATACCCAAGGAGATGAAACTGAAGCGGGAGAAGGAGGGGAAAATTAA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000008694 ortholog_one2one 2 retrogenes
retro_acar_25, retro_acar_44,
Bos taurus ENSBTAG00000000236 possible_ortholog 4 retrogenes
retro_btau_1482, retro_btau_635, retro_btau_68, retro_btau_910,
Canis familiaris ENSCAFG00000000580 possible_ortholog 6 retrogenes
retro_cfam_1302, retro_cfam_1521, retro_cfam_158, retro_cfam_1840, retro_cfam_233, retro_cfam_465,
Choloepus hoffmanni ENSCHOG00000004661 within_species_paralog 13 retrogenes
retro_chof_136, retro_chof_1427, retro_chof_1605, retro_chof_1835, retro_chof_2026, retro_chof_2115, retro_chof_2134, retro_chof_2233, retro_chof_429, retro_chof_481, retro_chof_489, retro_chof_527, retro_chof_863,
Choloepus hoffmanni ENSCHOG00000005782 within_species_paralog 15 retrogenes
retro_chof_1049, retro_chof_1325, retro_chof_1630, retro_chof_1670, retro_chof_1975, retro_chof_22, retro_chof_2221, retro_chof_2350, retro_chof_2423, retro_chof_2619, retro_chof_326, retro_chof_352, retro_chof_487, retro_chof_707, retro_chof_971,
Choloepus hoffmanni ENSCHOG00000010861 other_paralog 2 retrogenes
retro_chof_1912, retro_chof_905,
Callithrix jacchus ENSCJAG00000015844 ortholog_one2one 5 retrogenes
retro_cjac_1769, retro_cjac_2164, retro_cjac_3000, retro_cjac_31, retro_cjac_881,
Cavia porcellus ENSCPOG00000020285 ortholog_one2one 5 retrogenes
retro_cpor_220, retro_cpor_323, retro_cpor_434, retro_cpor_592, retro_cpor_644,
Dasypus novemcinctus ENSDNOG00000001672 possible_ortholog 10 retrogenes
retro_dnov_1007, retro_dnov_117, retro_dnov_1354, retro_dnov_1579, retro_dnov_1769, retro_dnov_1907, retro_dnov_1993, retro_dnov_2588, retro_dnov_892, retro_dnov_99,
Ficedula albicollis ENSFALG00000005860 ortholog_one2one 1 retrogene
retro_falb_13,
Felis catus ENSFCAG00000032017 ortholog_one2one 4 retrogenes
retro_fcat_1563, retro_fcat_1631, retro_fcat_1697, retro_fcat_60,
Gallus gallus ENSGALG00000010725 ortholog_one2one 1 retrogene
retro_ggal_3,
Gorilla gorilla ENSGGOG00000022133 ortholog_one2one 9 retrogenes
retro_ggor_1092, retro_ggor_1754, retro_ggor_211, retro_ggor_2379, retro_ggor_2997, retro_ggor_2998, retro_ggor_3020, retro_ggor_499, retro_ggor_544,
Loxodonta africana ENSLAFG00000004944 ortholog_one2one 2 retrogenes
retro_lafr_1089, retro_lafr_112,
Myotis lucifugus ENSMLUG00000017323 ortholog_one2one 3 retrogenes
retro_mluc_1617, retro_mluc_1686, retro_mluc_296,
Macaca mulatta ENSMMUG00000006489 ortholog_one2one 7 retrogenes
retro_mmul_1859, retro_mmul_1883, retro_mmul_2136, retro_mmul_2247, retro_mmul_2422, retro_mmul_2503, retro_mmul_451,
Mus musculus ENSMUSG00000022285 ortholog_one2one 3 retrogenes
retro_mmus_163, retro_mmus_2187, retro_mmus_744,
Oryctolagus cuniculus ENSOCUG00000000734 ortholog_one2many 2 retrogenes
retro_ocun_1091, retro_ocun_248,
Pongo abelii ENSPPYG00000018791 possible_ortholog 7 retrogenes
retro_pabe_103, retro_pabe_1242, retro_pabe_2047, retro_pabe_3417, retro_pabe_3740, retro_pabe_556, retro_pabe_89,
Pelodiscus sinensis ENSPSIG00000003703 ortholog_one2one 1 retrogene
retro_psin_13,
Sarcophilus harrisii ENSSHAG00000012671 possible_ortholog 2 retrogenes
retro_shar_126, retro_shar_409,
Sus scrofa ENSSSCG00000006062 ortholog_one2one 2 retrogenes
retro_sscr_222, retro_sscr_35,
Ictidomys tridecemlineatus ENSSTOG00000023864 ortholog_one2one 3 retrogenes
retro_itri_162, retro_itri_483, retro_itri_887,
Taeniopygia guttata ENSTGUG00000012078 ortholog_one2one 1 retrogene
retro_tgut_4,
Tursiops truncatus ENSTTRG00000015906 ortholog_one2one 4 retrogenes
retro_ttru_15, retro_ttru_1540, retro_ttru_207, retro_ttru_455,
Vicugna pacos ENSVPAG00000005865 ortholog_one2one 1 retrogene
retro_vpac_350,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_chof_292 78.47 89.96
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2. retro_chof_315 88.17 80.79
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3. retro_chof_933 66.05 91.27
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4. retro_chof_1572 60.00 63.32
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5. retro_chof_1703 77.84 75.98
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6. retro_chof_1890 83.25 82.53
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7. retro_chof_2321 90.52 91.70
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8. retro_chof_2346 76.78 90.83
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9. retro_chof_2669 83.33 78.60
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Download FASTA sequences of all ENSCHOG00000002798 retrocopies