RetrogeneDB - Parental gene ENSCHOG00000005782 details

Parental gene:	YWHAB, ENSCHOG00000005782
Aliases:	None
Description:	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:HGNC Symbol;Acc:12849]
Organism:	*Sloth (Choloepus hoffmanni)*
Coordinates:	scaffold_11182:12820..18073(+)

                            
>ENSCHOG00000005782
ATGACCATGGATAAAAGTGAGCTGGTACAGAAAGCCAAACTTGCCGAGCAGGCTGAGCGCTATGATGATATGGCTGCAGC

CATGAAGGCTGTCACAGAACAGGGGCACGAGCTCTCCAATAAGGAGAGAAATCTGCTCTCTGTCTCCTACAAGAATGTGG

TAGGTGCCCGCCGCTCTTCCTGGCGTGTCATCTCCAGCATTGAACAGAAAACCGAGAGGAATGAGAAGAAACAGCAGATG

GGCAAAGAGTACCGTGAGAAGATAGAGGCGGAACTGCAGGACATCTGCAATGATGTTCTGGAGCTGTTGGACAAATATCT

TATTCCCAATGCTACACAACCAGAAAGTAAGGTATTCTACTTGAAAATGAAAGGAGATTATTTTAGATATCTTTCTGAGG

TGGCATCTGGAGACAGTAAACAAACCACTGTGTCGAACTCCCAGCAGGCTTACCAGGAAGCATTTGAAATTAGTAAGAAA

GAAATGCAGCCTACACACCCAATTCGACTTGGCCTGGCACTTAATTTCTCAGTCTTTTACTATGAGATTCTAAATTCTCC

TGAAAAGGCCTGCAGCCTGGCAAAAACGGCATTTGATGAGGCGATTGCTGAGTTGGATACACTGAATGAAGAATCTTATA

AAGACAGCACCCTGATCATGCAGTTACTTAGGGACAATCTGACTNNNNGGACGTCAGAAACCCAGGGAGATGAAAGAGAA

GCTGGGGGAGGGAGAGACTAA

Species	Parental gene accession	Homology type	Retrogenes number
Anolis carolinensis	ENSACAG00000011796	ortholog_one2one	1 retrogene	retro_acar_8,
Choloepus hoffmanni	ENSCHOG00000002798	within_species_paralog	9 retrogenes	retro_chof_1572, retro_chof_1703, retro_chof_1890, retro_chof_2321, retro_chof_2346, retro_chof_2669, retro_chof_292, retro_chof_315, retro_chof_933,
Choloepus hoffmanni	ENSCHOG00000004661	within_species_paralog	13 retrogenes	retro_chof_136, retro_chof_1427, retro_chof_1605, retro_chof_1835, retro_chof_2026, retro_chof_2115, retro_chof_2134, retro_chof_2233, retro_chof_429, retro_chof_481, retro_chof_489, retro_chof_527, retro_chof_863,
Choloepus hoffmanni	ENSCHOG00000010861	other_paralog	2 retrogenes	retro_chof_1912, retro_chof_905,
Callithrix jacchus	ENSCJAG00000017664	ortholog_one2one	2 retrogenes	retro_cjac_1002, retro_cjac_2214,
Dipodomys ordii	ENSDORG00000001064	ortholog_one2one	14 retrogenes	retro_dord_235, retro_dord_236, retro_dord_255, retro_dord_256, retro_dord_258, retro_dord_259, retro_dord_262, retro_dord_263, retro_dord_332, retro_dord_442, retro_dord_545, retro_dord_681, retro_dord_725, retro_dord_9,
Echinops telfairi	ENSETEG00000009967	ortholog_one2one	4 retrogenes	retro_etel_1221, retro_etel_1380, retro_etel_1536, retro_etel_1705,
Homo sapiens	ENSG00000166913	ortholog_one2one	4 retrogenes	retro_hsap_4160, retro_hsap_4841, retro_hsap_622, retro_hsap_855,
Gorilla gorilla	ENSGGOG00000004580	ortholog_one2one	2 retrogenes	retro_ggor_2795, retro_ggor_699,
Microcebus murinus	ENSMICG00000000973	ortholog_one2one	7 retrogenes	retro_mmur_1044, retro_mmur_1100, retro_mmur_1288, retro_mmur_1576, retro_mmur_27, retro_mmur_305, retro_mmur_979,
Myotis lucifugus	ENSMLUG00000006319	ortholog_one2one	1 retrogene	retro_mluc_871,
Macaca mulatta	ENSMMUG00000013206	ortholog_one2one	3 retrogenes	retro_mmul_1061, retro_mmul_236, retro_mmul_673,
Monodelphis domestica	ENSMODG00000016200	ortholog_one2one	2 retrogenes	retro_mdom_1557, retro_mdom_212,
Nomascus leucogenys	ENSNLEG00000006643	ortholog_one2one	2 retrogenes	retro_nleu_42, retro_nleu_422,
Oryctolagus cuniculus	ENSOCUG00000003002	ortholog_one2one	1 retrogene	retro_ocun_273,
Otolemur garnettii	ENSOGAG00000008909	ortholog_one2many	3 retrogenes	retro_ogar_122, retro_ogar_1243, retro_ogar_2934,
Ochotona princeps	ENSOPRG00000011836	ortholog_one2one	2 retrogenes	retro_opri_56, retro_opri_924,
Pongo abelii	ENSPPYG00000011041	ortholog_one2one	5 retrogenes	retro_pabe_3453, retro_pabe_3454, retro_pabe_3519, retro_pabe_3520, retro_pabe_692,
Pan troglodytes	ENSPTRG00000013529	ortholog_one2one	12 retrogenes	retro_ptro_1010, retro_ptro_1686, retro_ptro_2390, retro_ptro_2828, retro_ptro_2887, retro_ptro_3125, retro_ptro_3201, retro_ptro_3225, retro_ptro_412, retro_ptro_453, retro_ptro_594, retro_ptro_965,
Pteropus vampyrus	ENSPVAG00000012662	ortholog_one2one	1 retrogene	retro_pvam_157,
Sarcophilus harrisii	ENSSHAG00000011241	ortholog_one2one	1 retrogene	retro_shar_483,
Sus scrofa	ENSSSCG00000007381	ortholog_one2one	1 retrogene	retro_sscr_506,
Ictidomys tridecemlineatus	ENSSTOG00000003733	ortholog_one2one	1 retrogene	retro_itri_1214,
Tupaia belangeri	ENSTBEG00000002806	ortholog_one2one	47 retrogenes	retro_tbel_1038, retro_tbel_1272, retro_tbel_1460, retro_tbel_1472, retro_tbel_1572, retro_tbel_1653, retro_tbel_1664, retro_tbel_2127, retro_tbel_2128, retro_tbel_2229, retro_tbel_2246, retro_tbel_228, retro_tbel_2371, retro_tbel_2373, retro_tbel_2379, retro_tbel_2397, retro_tbel_2512, retro_tbel_2536, retro_tbel_2540, retro_tbel_2542, retro_tbel_2583, retro_tbel_2584, retro_tbel_2615, retro_tbel_2617, retro_tbel_3502, retro_tbel_3554, retro_tbel_3604, retro_tbel_3642, retro_tbel_3743, retro_tbel_390, retro_tbel_3989, retro_tbel_3993, retro_tbel_40, retro_tbel_4101, retro_tbel_4121, retro_tbel_4338, retro_tbel_4447, retro_tbel_4456, retro_tbel_4459, retro_tbel_4510, retro_tbel_4514, retro_tbel_4604, retro_tbel_4664, retro_tbel_4690, retro_tbel_5, retro_tbel_705, retro_tbel_854,
Tarsius syrichta	ENSTSYG00000006537	ortholog_one2one	4 retrogenes	retro_tsyr_1065, retro_tsyr_1473, retro_tsyr_1637, retro_tsyr_2084,
Tursiops truncatus	ENSTTRG00000007615	ortholog_one2one	1 retrogene	retro_ttru_762,
Vicugna pacos	ENSVPAG00000005023	ortholog_one2one	3 retrogenes	retro_vpac_396, retro_vpac_516, retro_vpac_9,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_chof_22	66.95	95.12	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_chof_326	81.88	65.04	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_chof_352	62.31	79.27	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_chof_487	86.36	98.37	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_chof_707	79.29	56.91	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_chof_971	85.94	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_chof_1049	66.29	71.54	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_chof_1325	74.83	58.13	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_chof_1630	66.05	86.18	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_chof_1670	59.43	97.56	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_chof_1975	78.46	52.03	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_chof_2221	76.12	80.89	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_chof_2350	59.63	86.99	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_chof_2423	85.95	98.37	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_chof_2619	71.31	98.37	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCHOG00000005782 retrocopies

Parental gene:

YWHAB, ENSCHOG00000005782