RetrogeneDB ID: | retro_chof_933 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_171391:729..1341(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSCHOG00000002798 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:HGNC Symbol;Acc:12855] |
Percent Identity: | 66.05 % |
Parental protein coverage: | 91.27 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 6 |
Parental | MDK-NELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQ-K |
MDK.NELV.K.KLAEQAE.YDDMAACMKS.TEQ...L.NE.RNLLSVAYKNVVGA.RS.W...S.IEQ.K | |
Retrocopy | MDK<NELVEKVKLAEQAEQYDDMAACMKSGTEQEVGLPNEDRNLLSVAYKNVVGAIRS-WSILSRIEQ<K |
Parental | TE-GAEKKQQMAREYREKIETELRDICNDVLSLLE-KFLIPNASQAESK-VFYLKMKGDYYRYLAEVAAG |
TE.GAE...Q.......K......DI..DVL.LL..KFLI..........VF.LKMKGD.Y.YLAE.AAG | |
Retrocopy | TE<GAE-RKQHRAQEHRKLR-QS*DIFYDVLPLLK<KFLISQCLTSREQ<VFHLKMKGDNYPYLAEIAAG |
Parental | DDKXXIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAE-LD |
DDK...VD.SQQ.Y.EAFEISKKE..P.HPIRLGLA.NFSVFYYEILNS..K..SLAKT.FD.AIA..LD | |
Retrocopy | DDKKGTVD*SQQTYPEAFEISKKEV*PMHPIRLGLASNFSVFYYEILNSL*KTSSLAKTTFDDAIAD<LD |
Parental | TLSEE |
TLS.. | |
Retrocopy | TLSDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |