RetrogeneDB ID: | retro_chof_2350 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_67550:4076..4696(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAB | ||
Ensembl ID: | ENSCHOG00000005782 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:HGNC Symbol;Acc:12849] |
Percent Identity: | 59.63 % |
Parental protein coverage: | 86.99 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | KAVTEQGHELSNKERNLLSVSYKNV-VGARRSSWRVISSIEQKTERNEKKQQMGKEYREKIEAELQDICN |
K.V.EQG.EL...ER.LLSV.YK...VGA.RSSW..ISSIEQ..E..EKK.....E.REK.E.E...IC. | |
Retrocopy | KSVIEQGVELFKEERSLLSVAYKFL<VGACRSSWNAISSIEQNMEGTEKKT--A*ECREKFETEVRKICS |
Parental | DVLELLDKYLIPNAT-QPESKVFYLKMKGDYFRYLSEVAS-GDSKQTTVSNSQQAYQEAFEISKKEMQPT |
..L..L.K..IPNA....E.KVFYLKMKG.Y..YL.E.A..G......V..SQQ.Y.EA.EI..KE.QP. | |
Retrocopy | NILSVLEKFVIPNAS<IAERKVFYLKMKGNYYCYLMEGAT<GYDQKGIVDQSQQTY*EALEIIRKEIQPM |
Parental | HPIRLGLAL-NFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTXXTSET |
H.IRLGLAL.NFSVF........EK.CSLAKTAFDEAIAELDTL..ESYK.S.LIM.LL.DNL....S.T | |
Retrocopy | HTIRLGLAL<NFSVFCFFL----EKSCSLAKTAFDEAIAELDTLSKESYKASMLIMYLLTDNLILWISDT |
Parental | QGDEREAG |
QGDE.E.G | |
Retrocopy | QGDEAETG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |