RetrogeneDB ID: | retro_chof_1630 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_346025:268..898(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAB | ||
Ensembl ID: | ENSCHOG00000005782 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:HGNC Symbol;Acc:12849] |
Percent Identity: | 66.05 % |
Parental protein coverage: | 86.18 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | EQGHELSNKERNLLSVSYKNVVGARRSSWRVISSIEQKTERNEKKQQMGKEYREKIEAELQDICNDVLEL |
.Q..EL.N..RN.LSV.YKN.VGA.RSSWRVISSIEQK.E..EKK.QM..EYREKI...L.D..NDVL.. | |
Retrocopy | DQVAELPNEKRNPLSVAYKNPVGAHRSSWRVISSIEQKMEGAEKKHQMPGEYREKIGTDLGDT*NDVLSH |
Parental | LD-KYLIPNATQPESKVFYLKMKGDYF-RYLSEVASGDSK-QTTVSNSQQAYQEAFEISKKEMQPTHPIR |
L..K.L.P.....ESKVFYL.MKGDYF..YL..VA....K....V..SQQAYQEAFEISKKEMQP..PI. | |
Retrocopy | LE<KVLDPRCLT-ESKVFYL*MKGDYF<YYLAVVAGDEEK<RDCVDQSQQAYQEAFEISKKEMQPMQPIS |
Parental | LGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTXXTSETQGDER |
L.LALNFSVF.Y.ILNSPEKAC.LAK.A.D.A..ELDTL..ESYKD..LIMQLLRDNL...T..TQGDE. | |
Retrocopy | LNLALNFSVF*YVILNSPEKACFLAKAALDKAVGELDTLSQESYKDRKLIMQLLRDNLKLWTLDTQGDEA |
Parental | EAGGG |
E...G | |
Retrocopy | ETEEG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |