Parental gene:

NANOG, ENSCJAG00000018999

Aliases:None
Description:Nanog homeobox [Source:HGNC Symbol;Acc:20857]
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:20166984..20173162(+)


>ENSCJAG00000018999
ATGAGTATGGATCCAGTTTGTTCACAAAGCCTGCCTTGCTCCGAAGCATCCGACTGTGGAGAATCTTCACCTACGCCTGT
GATTTGTGAGCCTGAAGAAAATTATCCATCCTTGCAAATGTGTTCTGCTGAGATGCCTCACACAGAGACTGTCTCCCCTC
TTCCTTCCTCCATGGATCTGCTTACTCAGGACAGCCCTGATTCTTCCACCAGTCCCAAAGGGAAACGACCCACTGCTGCA
GAGAGTAGCCCTGCAGTGAAGGAAGACAAGGTCCCGGTCAAGAAACAGAAGACCAGAACTGTGTTCTCTTCCACCCAGCT
GTGTGTACTCAATGATAGATTTCAGAGACAGAAATATCTCAGTCTTCAGCAGATGCAAGAACTTTCCAACATCCTGAATC
TTAGCTACAAACAGGTGAAGACCTGGTTCCAAAACCAGAGAATGAAATCTAAGAGGTGGCAGAAAAACAACTGGCCAAGG
AACACCAGTGATGTGACTCAGAAGGCCTCAGCACCCACCTACCCCAGCCTCTACTCTTCCTACCACCAGGGATGCCTGGT
GAACACAGCTGGGAACCTTCCGGTATGGAACAACCAGACCTGGAGCAATTCAACCTGGAGCAACCAGACCCGGAACATCC
AGTCCTGGAGCAACCACTCCTGGAACACTCAGACCTGGTGCACCCAGTCCTGGAACACTCAGGCCTGGAGCAGTCCCTTC
TATAACTGTGGAGAGGAACCTCTGCAGTCCTGTATGCAGTTTCAGCCAAATTCTCCTGCCAGTGACTTGGAGGCTGCCTT
GGAAACTGCTGGGGAAAACCATAATGTAATACAGCAGACCACTAGGTATTTGAATACTTCACAAACCATGGATTTATTCC
TAAACTACTCTACGAACATGCCACCTGAAGATGTGTGA

Library Parental gene expression (RPM)
SRP051959_spleen 0 .00 RPM
SRP051959_skeletal_muscle 0 .00 RPM
SRP051959_lymph_node 0 .00 RPM
SRP051959_lung 0 .18 RPM
SRP051959_liver 0 .00 RPM
SRP051959_kidney 0 .02 RPM
SRP051959_heart 0 .02 RPM
SRP051959_colon 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017064 ortholog_one2many 1 retrogene
retro_amel_354,
Canis familiaris ENSCAFG00000013914 ortholog_one2many 1 retrogene
retro_cfam_724,
Choloepus hoffmanni ENSCHOG00000000972 ortholog_one2one 4 retrogenes
retro_chof_1267, retro_chof_264, retro_chof_794, retro_chof_987,
Cavia porcellus ENSCPOG00000002621 ortholog_one2many 1 retrogene
retro_cpor_1132,
Echinops telfairi ENSETEG00000004648 ortholog_one2many 8 retrogenes
retro_etel_1155, retro_etel_1334, retro_etel_134, retro_etel_1434, retro_etel_1935, retro_etel_630, retro_etel_818, retro_etel_963,
Felis catus ENSFCAG00000001621 ortholog_one2many 1 retrogene
retro_fcat_932,
Macropus eugenii ENSMEUG00000009949 ortholog_one2one 2 retrogenes
retro_meug_266, retro_meug_940,
Microcebus murinus ENSMICG00000002228 ortholog_one2one 1 retrogene
retro_mmur_575,
Myotis lucifugus ENSMLUG00000029325 ortholog_one2many 2 retrogenes
retro_mluc_1562, retro_mluc_2054,
Myotis lucifugus ENSMLUG00000030580 ortholog_one2many 1 retrogene
retro_mluc_169,
Monodelphis domestica ENSMODG00000017979 ortholog_one2one 2 retrogenes
retro_mdom_1293, retro_mdom_1938,
Mustela putorius furo ENSMPUG00000016731 ortholog_one2one 5 retrogenes
retro_mputfur_1140, retro_mputfur_1553, retro_mputfur_261, retro_mputfur_553, retro_mputfur_691,
Oryctolagus cuniculus ENSOCUG00000013783 ortholog_one2one 1 retrogene
retro_ocun_971,
Otolemur garnettii ENSOGAG00000026339 ortholog_one2one 1 retrogene
retro_ogar_568,
Procavia capensis ENSPCAG00000015460 ortholog_one2one 2 retrogenes
retro_pcap_143, retro_pcap_429,
Pteropus vampyrus ENSPVAG00000006989 ortholog_one2one 1 retrogene
retro_pvam_1251,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_402 68.37 63.93
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2. retro_cjac_880 80.50 65.25
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3. retro_cjac_989 52.76 51.80
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4. retro_cjac_1732 86.75 54.10
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5. retro_cjac_2234 75.20 81.64
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6. retro_cjac_2441 62.55 78.69
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7. retro_cjac_4153 79.19 63.93
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8. retro_cjac_4177 97.95 63.93
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Download FASTA sequences of all ENSCJAG00000018999 retrocopies