RetrogeneDB ID: | retro_pcap_429 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_84576:7033..7386(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NANOG | ||
Ensembl ID: | ENSPCAG00000015460 | ||
Aliases: | None | ||
Description: | Nanog homeobox [Source:HGNC Symbol;Acc:20857] |
Percent Identity: | 58.68 % |
Parental protein coverage: | 50.85 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | VRTVFSQTQLCVLKDRFQKQ-KYLSLQQMQELSEVLNLSYKQVKTWFQNQRMKCKRWQKNTTWSKNGSGF |
VRTV.SQT..CVLKD.FQKQ..Y.S.Q.M.ELSEVLNLSYKQ.KTWF.NQRMK.KR.QKN..WSKN..G. | |
Retrocopy | VRTVSSQT*PCVLKD*FQKQ<EYRSFQKM*ELSEVLNLSYKQIKTWFRNQRMKRKRQQKNSNWSKNSNGV |
Parental | TQKILTPNKFLELCSSYHQGCLNNQTWNNPVWSNQTWNNSAWSNQTWNTQA |
T.K...P..FL.L...Y.Q..L.....N.P.W.NQT....AW..Q..N.Q. | |
Retrocopy | TRKVSAPAEFLDLYPFYDQKWL--PSGNFPMWKNQT*SIQAWCTQS*NSQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |