RetrogeneDB ID: | retro_chof_794 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_1489:30595..31381(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NANOG | ||
Ensembl ID: | ENSCHOG00000000972 | ||
Aliases: | None | ||
Description: | Nanog homeobox [Source:HGNC Symbol;Acc:20857] |
Percent Identity: | 99.24 % |
Parental protein coverage: | 88.51 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | YASLQMSSAEVHQPETVSPLPSSVDLLIQDSPDSSTSPKVKLPMSGGKSAGRKEDEGQVKKQKIRTVFSQ |
.ASLQMSSAEVHQPETVSPLPSSVDLLIQDSPDSSTSPKVKLPMSGGKSAGRKEDEGQVKKQKIRTVFSQ | |
Retrocopy | HASLQMSSAEVHQPETVSPLPSSVDLLIQDSPDSSTSPKVKLPMSGGKSAGRKEDEGQVKKQKIRTVFSQ |
Parental | TQLCILNDRFQKQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKCKKWQKNTNWSKNGNSVIQKGSAPT |
TQLCILNDRFQKQKYLSLQQMQELSNIL.LSYKQVKTWFQNQRMKCKKWQKNTNWSKNGNSVIQKGSAPT | |
Retrocopy | TQLCILNDRFQKQKYLSLQQMQELSNILSLSYKQVKTWFQNQRMKCKKWQKNTNWSKNGNSVIQKGSAPT |
Parental | EFPGLYSSYPQGCLANTSGNFPMWSNQTWNSPIWSSHSWSSQHWYTQAWNNNPVWNNQFQNSGEESLQLQ |
EFPGLYSSYPQGCLANTSGNFPMWSNQTWNSPIWSSHSWSSQHWYTQAWNNNPVWNNQFQNSGEESLQLQ | |
Retrocopy | EFPGLYSSYPQGCLANTSGNFPMWSNQTWNSPIWSSHSWSSQHWYTQAWNNNPVWNNQFQNSGEESLQLQ |
Parental | VQFQQNSPASDLEATLGSAGENHNVIEQAAKYFSTLHTMDLFPNYFMNTQPE |
VQFQQNSPASDLEATLGSAGENHNVIEQAAKYFSTLHTMDLFPNYFMNTQPE | |
Retrocopy | VQFQQNSPASDLEATLGSAGENHNVIEQAAKYFSTLHTMDLFPNYFMNTQPE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |