RetrogeneDB ID: | retro_chof_264 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | GeneScaffold_5800:25029..25917(-) | ||
Located in intron of: | ENSCHOG00000012810 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NANOG | ||
Ensembl ID: | ENSCHOG00000000972 | ||
Aliases: | None | ||
Description: | Nanog homeobox [Source:HGNC Symbol;Acc:20857] |
Percent Identity: | 98.31 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSVDLASTQSLPCPETDNSRESSPMPEIYEAEKNYASLQMSSAEVHQPETVSPLPSSVDLLIQDSPDSST |
MSVDLAS.QSLPCPETDNSRESSPMPEIYEAEKNYASLQMSSAEVHQPETVSPLPSSVDLLIQDSPDSST | |
Retrocopy | MSVDLASPQSLPCPETDNSRESSPMPEIYEAEKNYASLQMSSAEVHQPETVSPLPSSVDLLIQDSPDSST |
Parental | SPKVKLPMSGGKSAGRKEDEGQVKKQKIRTVFSQTQLCILNDRFQKQKYLSLQQMQELSNILNLSYKQVK |
SPKVKLPMSGGKSAGRKEDEGQVKKQKIRTVFSQTQLCILNDRFQKQKYLSLQQMQELSNILNLSYKQVK | |
Retrocopy | SPKVKLPMSGGKSAGRKEDEGQVKKQKIRTVFSQTQLCILNDRFQKQKYLSLQQMQELSNILNLSYKQVK |
Parental | TWFQNQRMKCKKWQKNTNWSKNGNSVIQKGSAPTEFPGLYSSYPQGCLANTSGNFPMWSNQTWNSPIWSS |
TWFQNQRMKCKKWQKNTNWSKNGNSVIQKGSAPTEFPGLYSSYPQGCLANTSGNFPMWSNQTWNSPIWSS | |
Retrocopy | TWFQNQRMKCKKWQKNTNWSKNGNSVIQKGSAPTEFPGLYSSYPQGCLANTSGNFPMWSNQTWNSPIWSS |
Parental | HSWSSQHWYTQAWNNNPVWNNQFQNSGEESLQLQVQFQQNSPASDLEATLGSAGENHNVIEQAAKYFSTL |
HSWSSQHWYTQAWNNNPVWNNQFQNSGEESLQ.QVQFQQNSP.SDLEATLGSAG.NHNVIEQAAKYFSTL | |
Retrocopy | HSWSSQHWYTQAWNNNPVWNNQFQNSGEESLQPQVQFQQNSPVSDLEATLGSAGGNHNVIEQAAKYFSTL |
Parental | HTMDLFPNYFMNTQPE |
HTMDLFPNYFMN.QPE | |
Retrocopy | HTMDLFPNYFMNIQPE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |