Parental gene:

NANOG, ENSMODG00000017979

Aliases:None
Description:Nanog homeobox [Source:HGNC Symbol;Acc:20857]
Organism:Opossum (Monodelphis domestica)
Coordinates:8:104628272..104648421(-)


>ENSMODG00000017979
ATGAGCTCCTGCTCTCACTCTCAGCAATGCCAGTCTTGCCGGCCCAAAGGTGATGCCAGCCGCCCTTACTACACTTGGAT
CTCCGCGTCCCAGCCAGAGTCACTTACTTCCCCAAGCCGTTACTCTAATTGCCACATACAAAGTCCGGGAAAGGTCCAGC
CAAACACAGCAATTTCTCCTGCTCCTTCATCCATGGATAAATGTATTCAAGACACTCCTGATTCTGCCACTAGCCCTACT
TCAAATAGCCTTTCCTCCCAGAACAAGCCCAAGACCCATCAGGGAAAAGATCAAAGCCCCATCAAAAAACCTAAGATGAG
AACAGTGTTCTCTCAGGCTCAACTGAATGTACTCAACAGCAGATTTGTAGAGCAGAAATACCTAAGCCCACAGCAGATCC
GAAATGTGGCTGAGAATTTGAACCTTACTTACAAACAGGTCAAGACCTGGTTTCAGAACCAGAGAATGAAATCAAAGAGA
TGGCAGAAAGATACCATGTGGACAAAGAACGGCAACCGTAATGTTCAGAATGGATCAGCTCTTGGGGAGTACATAAGTCT
CTACTCTCCATTTCACCAGGACTATATGGTTAGTTCTTCTGGAACTCTTCCAGTATGGAGCAACCAGACTTGGAATAATC
AGTTCCAGAATAGTGGTGAGGGCTCCTATCAGCATCAGATATTTCAGCACTCTTACCCTGCCAGTGACTTGGGGGCTACC
TTTGGAAATAACACTGGTGGGGCTTATTCCATGAAATCACAGACTTCTTTGAGTTTTAATACTCCCTACCCCATGGAATA
TCTCCCAAGCTACTCCATGAACATGCAGCTGACCCACAGC

Library Parental gene expression (RPM)
SRP007412_brain 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .00 RPM
SRP007412_kidney 0 .00 RPM
SRP007412_liver 0 .00 RPM
SRP007412_testis 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017064 ortholog_one2many 1 retrogene
retro_amel_354,
Canis familiaris ENSCAFG00000013914 ortholog_one2many 1 retrogene
retro_cfam_724,
Choloepus hoffmanni ENSCHOG00000000972 ortholog_one2one 4 retrogenes
retro_chof_1267, retro_chof_264, retro_chof_794, retro_chof_987,
Callithrix jacchus ENSCJAG00000018999 ortholog_one2one 8 retrogenes
retro_cjac_1732, retro_cjac_2234, retro_cjac_2441, retro_cjac_402, retro_cjac_4153, retro_cjac_4177, retro_cjac_880, retro_cjac_989,
Cavia porcellus ENSCPOG00000002621 ortholog_one2many 1 retrogene
retro_cpor_1132,
Echinops telfairi ENSETEG00000004648 ortholog_one2many 8 retrogenes
retro_etel_1155, retro_etel_1334, retro_etel_134, retro_etel_1434, retro_etel_1935, retro_etel_630, retro_etel_818, retro_etel_963,
Felis catus ENSFCAG00000001621 ortholog_one2many 1 retrogene
retro_fcat_932,
Homo sapiens ENSG00000111704 ortholog_one2one 5 retrogenes
retro_hsap_1455, retro_hsap_1549, retro_hsap_3713, retro_hsap_4814, retro_hsap_722,
Gorilla gorilla ENSGGOG00000028196 ortholog_one2many 4 retrogenes
retro_ggor_1812, retro_ggor_2510, retro_ggor_3000, retro_ggor_608,
Macropus eugenii ENSMEUG00000009949 ortholog_one2one 2 retrogenes
retro_meug_266, retro_meug_940,
Microcebus murinus ENSMICG00000002228 ortholog_one2one 1 retrogene
retro_mmur_575,
Myotis lucifugus ENSMLUG00000029325 ortholog_one2many 2 retrogenes
retro_mluc_1562, retro_mluc_2054,
Myotis lucifugus ENSMLUG00000030580 ortholog_one2many 1 retrogene
retro_mluc_169,
Macaca mulatta ENSMMUG00000032158 ortholog_one2many 4 retrogenes
retro_mmul_1901, retro_mmul_2466, retro_mmul_964, retro_mmul_979,
Mustela putorius furo ENSMPUG00000016731 ortholog_one2one 5 retrogenes
retro_mputfur_1140, retro_mputfur_1553, retro_mputfur_261, retro_mputfur_553, retro_mputfur_691,
Nomascus leucogenys ENSNLEG00000005359 ortholog_one2many 3 retrogenes
retro_nleu_1086, retro_nleu_2189, retro_nleu_2340,
Oryctolagus cuniculus ENSOCUG00000013783 ortholog_one2one 1 retrogene
retro_ocun_971,
Otolemur garnettii ENSOGAG00000026339 ortholog_one2one 1 retrogene
retro_ogar_568,
Procavia capensis ENSPCAG00000015460 ortholog_one2one 2 retrogenes
retro_pcap_143, retro_pcap_429,
Pongo abelii ENSPPYG00000004233 ortholog_one2many 5 retrogenes
retro_pabe_2157, retro_pabe_3142, retro_pabe_3440, retro_pabe_3742, retro_pabe_623,
Pan troglodytes ENSPTRG00000029807 ortholog_one2one 4 retrogenes
retro_ptro_1746, retro_ptro_2514, retro_ptro_3203, retro_ptro_990,
Pteropus vampyrus ENSPVAG00000006989 ortholog_one2one 1 retrogene
retro_pvam_1251,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_1293 63.43 94.29
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2. retro_mdom_1938 87.50 53.93
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Download FASTA sequences of all ENSMODG00000017979 retrocopies