RetrogeneDB ID: | retro_amel_354 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192398.1:1321006..1321694(-) | ||
Located in intron of: | ENSAMEG00000018299 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000017064 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.39 % |
Parental protein coverage: | 74.84 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | SVDPAPPQCPPGPEAPSSRDSNPMPEIYGPEENYASLQMSPAETLHTETVSPPPSSMDLLVQDS-PDSST |
S.DPA.PQCPP.PEAP.SRDS.PMP.IYGPEENYASLQMS.AET.H.ETVSP.P.SMDLL.QDS.PDSST | |
Retrocopy | SADPAQPQCPPCPEAPNSRDSSPMPDIYGPEENYASLQMSSAETPHMETVSPLPPSMDLLIQDS<PDSST |
Parental | SPRGKLPPTSVEERTVRKEDTTQGKKQKIRTVFSQTQLYVLNDRFQRQKYLSLQQMQELSNILNLSYKQV |
SPR.KL...S.EER.V.KED...GKKQK.RT.FSQTQL.V.NDRFQRQKYLSLQQ.Q...NILN.SYKQV | |
Retrocopy | SPRVKLLLASIEERRVKKEDMALGKKQKNRTLFSQTQLFVPNDRFQRQKYLSLQQIQGTPNILNVSYKQV |
Parental | KTWFQNQRMKCKRWQKNHWPKESKSVTQNSAATVEYPGFYSYHQGYLMNTSG-NLPIWSNQTWNSQSWSN |
KTWFQNQRMKC.RWQK..WP..S.SVTQNS.AT.E.PGF...HQG.LMNT.G.NL.IWSN...NSQ.... | |
Retrocopy | KTWFQNQRMKCERWQKENWP-NSNSVTQNSSATTEHPGFSCNHQG*LMNTPG<NLSIWSNHSCNSQTSCP |
Parental | HSWNGQAWSN--HSWTSQTWCPQ |
..WN.Q.W.N..HS.......PQ | |
Retrocopy | QAWNNQTWNNQLHSCGEESL*PQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |