RetrogeneDB ID: | retro_cpor_1132 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_5:21956246..21956830(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000002621 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.67 % |
Parental protein coverage: | 74.62 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MSVAPDCPPSLSCSEAA-GSGDPSPTPEVPRPAETCGALQPPEAEQPLAESASPITSSGNLLTQETPDSS |
.SVAPDCPPSL.CSEAA.GS..PS..PEVPRPAETCGALQ.PEAE..LAES.SP..SSG.LL.QE.PDSS | |
Retrocopy | VSVAPDCPPSLPCSEAA<GSRYPSLVPEVPRPAETCGALQLPEAEESLAESTSPVPSSGDLLIQEAPDSS |
Parental | I-PCATLPSSLEALGRKEEGKVAGRKLKPYTVLSKMQLCVLRDRFQRQQYLNLQHIQELSSLLNLSCKQI |
..PCATLPSSLEALGRK.EGKV.G.KLKPYT.L.KMQLCVLRDRFQRQQYL.L.HIQELSSLLNLSCKQ. | |
Retrocopy | TSPCATLPSSLEALGRKKEGKVLGKKLKPYTILLKMQLCVLRDRFQRQQYLSL*HIQELSSLLNLSCKQV |
Parental | KTWFQNQRMKCKKWQKSTGLQNGSGAPEKVPAPAEYPGVCSNYAQSCLVNTSGNLP |
K.WFQNQRM.CK.WQKST.LQNG.GAPEKVPAPAEYPGVCSNYAQSCLVNTSG.LP | |
Retrocopy | KIWFQNQRMRCKRWQKSTWLQNGGGAPEKVPAPAEYPGVCSNYAQSCLVNTSGKLP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .12 RPM | 0 .17 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
SRP040447_lung | 0 .15 RPM | 0 .00 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 0 .00 RPM |