RetrogeneDB ID: | retro_chof_1267 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_24140:9453..10329(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NANOG | ||
Ensembl ID: | ENSCHOG00000000972 | ||
Aliases: | None | ||
Description: | Nanog homeobox [Source:HGNC Symbol;Acc:20857] |
Percent Identity: | 86.05 % |
Parental protein coverage: | 99.32 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MSVDLASTQSLPCPETDNSRESSPMPEIYEAEKNYASLQMSSAEVHQPETVSPLPSSVDLLIQDSPDSST |
MSVDLAS.QSLPCPETD.S.ESSPMPEIYEAE.N.ASLQ.SSAEVHQ.ETVSPLPSSVDLL.QDSP.SS. | |
Retrocopy | MSVDLASPQSLPCPETDDSSESSPMPEIYEAEEN*ASLQLSSAEVHQSETVSPLPSSVDLLTQDSPYSS- |
Parental | SPKVKLPMSGGKSAGRKEDEGQVKKQKIRTVFSQTQLCILNDRFQKQKYLSLQQMQELSNILNLSYKQVK |
SPKVKLP..GGKS.G.KEDEGQVKKQKIRTVFSQTQLCILNDRFQ.QK.LSLQ.MQELSNILNLSYKQVK | |
Retrocopy | SPKVKLPAPGGKSIGKKEDEGQVKKQKIRTVFSQTQLCILNDRFQRQKCLSLQKMQELSNILNLSYKQVK |
Parental | TWFQNQRMKCKKWQKNTNWSKNGNSVIQKGSAPTEFPGLYSSYPQGCLANTSGNFPMWSNQTWNSPIWSS |
TWFQN.RMKCKKWQKNTNWSK..NSVIQ.G.APTE.P.LYSSYPQG.L.NT..NFPMWSNQTWNSPIWSS | |
Retrocopy | TWFQNRRMKCKKWQKNTNWSKSSNSVIQ-GLAPTEYPELYSSYPQGSLVNTYSNFPMWSNQTWNSPIWSS |
Parental | HSWSSQHWYTQAWNNNPVWNNQFQNSGEESLQLQVQFQQNSPASDLEATLGSAGENHNVIEQAAKYFSTL |
HS..SQ.WYTQAWNNNPVWNNQFQNS.EES.Q.QVQFQQNSPAS.LEAT.GS.GE.HNVIEQ.AKY..TL | |
Retrocopy | HS*NSQPWYTQAWNNNPVWNNQFQNSEEESQQTQVQFQQNSPASELEATSGSSGESHNVIEQTAKYLRTL |
Parental | HTMDLFPNYFMNTQ |
HTMDLFPNYFMNTQ | |
Retrocopy | HTMDLFPNYFMNTQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |