RetrogeneDB ID: | retro_cfam_724 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 16:13769063..13769612(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000013914 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 59.69 % |
Parental protein coverage: | 62.75 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MPAGPQAPNSRDPSPMPEVYGPRGNPASLPMSSAET-PHAETVSPLPSSMDLLTQDSPDS-STSPRVKLP |
.P..PQ..N.R..S.MPE.YG...N.A.L..S.AE..PH.ET.SP.PSSMDLL.Q.SPDS.S......LP | |
Retrocopy | VPILPQSTNCRNSS-MPEIYGSKENYAPLQISAAEN<PHMETISPFPSSMDLLIQASPDS>SSKTSESLP |
Parental | PTSGEERTARKEDATQGKKQKMRTVFSQTQLYVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQ |
.....E.T..KE...QGKK.KM...FSQTQLYVLNDRFQRQKYLS.QQM.ELS..LNLSYKQVKTWFQNQ | |
Retrocopy | --TSVESTVKKEVMAQGKKEKM---FSQTQLYVLNDRFQRQKYLSFQQMGELSSLLNLSYKQVKTWFQNQ |
Parental | RMKSKRWQKSNWPKES--NSVTQNSSATTEYAGFYPCRQGYLLNPSGNLPL |
RMK....QK.N.......N.V..NSSATTE..GFY....G.L...SGNLP. | |
Retrocopy | RMK*RW*QKNNNVRVAG*NGVSRNSSATTEHPGFYSYHRGFLMQTSGNLPV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .08 RPM | 0 .00 RPM |
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |