RetrogeneDB ID: | retro_mdom_1293 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 4:330466533..330467329(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NANOG | ||
Ensembl ID: | ENSMODG00000017979 | ||
Aliases: | None | ||
Description: | Nanog homeobox [Source:HGNC Symbol;Acc:20857] |
Percent Identity: | 63.43 % |
Parental protein coverage: | 94.29 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | MSSCSHSQQCQSCRPKGDASRPYYTWISASQPESLTSPSRYSNCHIQSPGKVQPNTAISPA-PSSMDKCI |
.SSCSHSQQCQSC.P......P....IS..QP.....P..Y.NC.IQSP.K.QP.TAI.PA.PSSMD..I | |
Retrocopy | ISSCSHSQQCQSCQPESNSRHP*SLCISKFQPQAFNFPNPYPNCQIQSPEKLQPTTAIFPASPSSMDVLI |
Parental | QDTPDSATSPT-SNSLSSQNKPKTHQGKD-QSPIKKPKMRTVFSQAQLNVLNSRFVEQKYLSPQQIRNVA |
QD.PDSA..PT..N.L...NK.K.HQGK..Q...K..KM..V.SQ.QLNVLNS..VEQKYLSPQQI.NVA | |
Retrocopy | QDIPDSAIIPT<LNNLCFHNKSKIHQGKVYQNALKTSKMSIVHSQSQLNVLNSTSVEQKYLSPQQIENVA |
Parental | ENL-NLTYKQVKTWFQNQRMKSKRWQKDTMWTKNGNRNVQNGSALGEYISLYSPFHQDYMVSSSGTLPVW |
ENL..LTYK..K.WFQNQRMKS....KDTMW..NGN...QNGS..G..ISLYSPFHQ.Y..S.SG.L..W | |
Retrocopy | ENL<DLTYKEIKSWFQNQRMKSNG**KDTMWSRNGNSSAQNGSTVG*NISLYSPFHQHYVFSTSGNLSIW |
Parental | SNQTWNNQFQNSGEGSYQHQIFQHSYPASDLGATFGNNTGGAYSMKSQTSLSFNTPYP |
SNQTWNNQ..N.GEG.YQHQ.FQHSY.ASDLG.TFG.N....Y.MKSQT...F.TP.P | |
Retrocopy | SNQTWNNQL*NGGEGFYQHQMFQHSYSASDLGDTFGKNSNETYPMKSQTFMNFSTPFP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |