RetrogeneDB ID: | retro_mputfur_553 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896919.1:8058385..8058990(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NANOG | ||
Ensembl ID: | ENSMPUG00000016731 | ||
Aliases: | None | ||
Description: | Nanog homeobox [Source:HGNC Symbol;Acc:20857] |
Percent Identity: | 71.98 % |
Parental protein coverage: | 66.13 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MSADPAPPQCRSGPRPPGSRDSSPMPEVCRHEENYAFLQMSSAETPHAETVSPLPSSVDLLVQDSPDSST |
..ADPA.P....GP..P.S.DSSPMPE....EENY..LQMSSAETPH....S.LPSS..LL.QDSP...T | |
Retrocopy | VTADPALP----GPGEPSSWDSSPMPEIYQPEENYVSLQMSSAETPHMKNISLLPSSMNLLIQDSPKCPT |
Parental | SPKVKLPPTSAEERTGRREDTAQGKKQKIRT-VFSQTQLYVLNDRFQRQKYLSLQQMQELSNILNLSYKQ |
.P.VKLP.TSAE.RT.R.ED.AQGKK......V.S.TQLYVLND.FQRQKYLSLQQMQ.LSNILNLSYKQ | |
Retrocopy | NPRVKLPRTSAE*RTVRKEDMAQGKK*RLGP>VLSPTQLYVLNDQFQRQKYLSLQQMQDLSNILNLSYKQ |
Parental | VKTWFQNQRMKCKRWQ-KNHWPKESKSVTQNSTAATEYPAFYSYHQGHLMNTSANLPIWSSQTWNNP |
VKT.FQNQ.MKCKRWQ.KNHWPKESKS.TQNST..TEYP.FYSY.QG.LM.TS.NLP.WS.QTWNNP | |
Retrocopy | VKT*FQNQKMKCKRWQ>KNHWPKESKSMTQNSTVTTEYPGFYSYNQGYLMSTSRNLPVWSNQTWNNP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |