Parental gene:

SNRPEL1, ENSPTRG00000030224

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:1:182688045..182698563(+)


>ENSPTRG00000030224
ATGGCGTACCGTGGCCAGGGCCAGAAAGTGCAGAAGGTTATGGTGCAGCCCATCAACCTCATCTTCAGATACTTACAAAA
TAGATCGCGGATTCAGGTGTGGCTCTATGAGCAAGTGAATATGCGGATAGAAGGCTGTATCATTGGTTTTGATGAGTATA
TGAACCTTGTATTAGATGATGCAGAAGAGATTCATTCTAAAACAAAGTCAAGAAAACAACTGGGTCGGATCATGCTAAAA
GGAGATAATATTACTCTGCTACAAAGTGTCTCCAACTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 11 .39 RPM
SRP007412_cerebellum 6 .20 RPM
SRP007412_heart 4 .78 RPM
SRP007412_kidney 10 .41 RPM
SRP007412_liver 5 .30 RPM
SRP007412_testis 4 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000009158 ortholog_one2one 6 retrogenes
retro_chof_139, retro_chof_1870, retro_chof_1897, retro_chof_1981, retro_chof_2652, retro_chof_450,
Callithrix jacchus ENSCJAG00000006735 possible_ortholog 1 retrogene
retro_cjac_3163,
Dasypus novemcinctus ENSDNOG00000004490 possible_ortholog 24 retrogenes
retro_dnov_1009, retro_dnov_1141, retro_dnov_122, retro_dnov_1223, retro_dnov_1312, retro_dnov_1314, retro_dnov_1362, retro_dnov_1438, retro_dnov_163, retro_dnov_191, retro_dnov_2398, retro_dnov_2671, retro_dnov_360, retro_dnov_414, retro_dnov_513, retro_dnov_579, retro_dnov_796, retro_dnov_828, retro_dnov_898, retro_dnov_900, retro_dnov_902, retro_dnov_93, retro_dnov_967, retro_dnov_983,
Echinops telfairi ENSETEG00000014015 possible_ortholog 24 retrogenes
retro_etel_1136, retro_etel_1244, retro_etel_138, retro_etel_1443, retro_etel_1530, retro_etel_1636, retro_etel_1739, retro_etel_1781, retro_etel_1947, retro_etel_2143, retro_etel_234, retro_etel_258, retro_etel_310, retro_etel_377, retro_etel_466, retro_etel_546, retro_etel_56, retro_etel_579, retro_etel_581, retro_etel_582, retro_etel_76, retro_etel_776, retro_etel_799, retro_etel_80,
Felis catus ENSFCAG00000000873 ortholog_one2one 2 retrogenes
retro_fcat_1836, retro_fcat_554,
Homo sapiens ENSG00000182004 ortholog_one2one 10 retrogenes
retro_hsap_130, retro_hsap_1668, retro_hsap_2022, retro_hsap_2073, retro_hsap_2287, retro_hsap_3262, retro_hsap_4228, retro_hsap_4660, retro_hsap_516, retro_hsap_576,
Gorilla gorilla ENSGGOG00000000755 possible_ortholog 7 retrogenes
retro_ggor_1462, retro_ggor_1626, retro_ggor_1700, retro_ggor_2221, retro_ggor_228, retro_ggor_2892, retro_ggor_91,
Microcebus murinus ENSMICG00000015537 ortholog_one2one 3 retrogenes
retro_mmur_1406, retro_mmur_453, retro_mmur_58,
Monodelphis domestica ENSMODG00000028394 ortholog_one2one 3 retrogenes
retro_mdom_1164, retro_mdom_1790, retro_mdom_1865,
Mustela putorius furo ENSMPUG00000011642 possible_ortholog 7 retrogenes
retro_mputfur_1078, retro_mputfur_1527, retro_mputfur_1634, retro_mputfur_53, retro_mputfur_638, retro_mputfur_729, retro_mputfur_949,
Pongo abelii ENSPPYG00000000326 ortholog_one2many 8 retrogenes
retro_pabe_1375, retro_pabe_20, retro_pabe_2023, retro_pabe_228, retro_pabe_3015, retro_pabe_3620, retro_pabe_56, retro_pabe_610,
Sorex araneus ENSSARG00000003311 possible_ortholog 9 retrogenes
retro_sara_171, retro_sara_173, retro_sara_183, retro_sara_214, retro_sara_219, retro_sara_37, retro_sara_664, retro_sara_697, retro_sara_750,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_134 94.59 79.35
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2. retro_ptro_385 76.34 100.00
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3. retro_ptro_426 56.45 67.39
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4. retro_ptro_1131 88.04 100.00
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5. retro_ptro_1345 88.00 81.52
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6. retro_ptro_1346 86.67 81.52
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7. retro_ptro_1526 92.39 100.00
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8. retro_ptro_1620 88.17 100.00
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9. retro_ptro_2206 83.82 73.91
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10. retro_ptro_2872 97.83 100.00
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11. retro_ptro_3096 73.42 82.61
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Download FASTA sequences of all ENSPTRG00000030224 retrocopies