RetrogeneDB ID: | retro_pabe_20 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 9:56059409..56059685(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000019223 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000000326 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.65 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKS |
MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNM.IEGCI.GFDEYMNLVLDDAEEIHSKTKS | |
Retrocopy | MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMQIEGCITGFDEYMNLVLDDAEEIHSKTKS |
Parental | RKQLGRIMLKGDNITLLQSVSN |
RKQLGRIMLKG.NITLLQS.SN | |
Retrocopy | RKQLGRIMLKGGNITLLQSLSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 4 .64 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .69 RPM |
SRP007412_heart | 0 .00 RPM | 6 .11 RPM |
SRP007412_kidney | 0 .00 RPM | 7 .96 RPM |
SRP007412_liver | 0 .03 RPM | 6 .49 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4228 |
Pan troglodytes | retro_ptro_2872 |
Gorilla gorilla | retro_ggor_91 |