RetrogeneDB ID:

retro_etel_310

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:GeneScaffold_5100:118185..118461(-)
Located in intron of:ENSETEG00000014007
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSETEG00000014015
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_etel_310
ATGGCGTACTGTGGCCAAGGCCAGAAGGTACAGAAGGCGATGGCGCAGCCCATCAACCTCCTCTTCAGATACTTGCGAAA
TAGATCGCGGATTCAGGTGTGGCTCTATGAGCAAGTGACTATGCGGATAGAGGGCTGTATCGTAGGCTTTGATGAGTACA
TGAACCTTGGATTAGATGACACAGAAGAGATTCATTCTAAAACAAAGTCAAGGAAACAACTGGGACGGGTCATGCTGAAA
TGAGATCACATTACTGTGTTACAAAGTGTGTCCAAC

ORF - retro_etel_310 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.87 %
Parental protein coverage: 100.0 %
Number of stop codons detected: 1
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalMAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKS
MAY.GQGQKVQK.M.QPINL.FRYL.NRSRIQVWLYEQV.MRIEGCI.GFDEYMNL.LDD.EEIHSKTKS
RetrocopyMAYCGQGQKVQKAMAQPINLLFRYLRNRSRIQVWLYEQVTMRIEGCIVGFDEYMNLGLDDTEEIHSKTKS
ParentalRKQLGRIMLKGDNITLLQSVSN
RKQLGR.MLK.D.IT.LQSVSN
RetrocopyRKQLGRVMLK*DHITVLQSVSN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Echinops telfairi was not studied using ChIP-Seq data.

EST - click to see more details

Echinops telfairi was not studied using EST data.

TSS - click to see more details

Echinops telfairi was not studied using FANTOM5 data.

Lab - click to see more details

retro_etel_310 was not experimentally validated.

Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 25 parental genes, and 188 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000008828 retrocopies
retro_amel_1112, retro_amel_1206, retro_amel_1211, retro_amel_1293, retro_amel_1517, retro_amel_1530, retro_amel_185, retro_amel_412,
Choloepus hoffmanni ENSCHOG000000091586 retrocopies
retro_chof_139, retro_chof_1870, retro_chof_1897, retro_chof_1981, retro_chof_2652, retro_chof_450,
Callithrix jacchus ENSCJAG000000067351 retrocopy
retro_cjac_3163,
Dasypus novemcinctus ENSDNOG0000000449024 retrocopies
retro_dnov_1009, retro_dnov_1141, retro_dnov_122, retro_dnov_1223, retro_dnov_1312, retro_dnov_1314, retro_dnov_1362, retro_dnov_1438, retro_dnov_163, retro_dnov_191, retro_dnov_2398, retro_dnov_2671, retro_dnov_360, retro_dnov_414, retro_dnov_513, retro_dnov_579, retro_dnov_796, retro_dnov_828, retro_dnov_898, retro_dnov_900, retro_dnov_902, retro_dnov_93, retro_dnov_967, retro_dnov_983,
Erinaceus europaeus ENSEEUG000000061876 retrocopies
retro_eeur_339, retro_eeur_497, retro_eeur_579, retro_eeur_613, retro_eeur_85, retro_eeur_92,
Echinops telfairi ENSETEG00000014015 24 retrocopies
retro_etel_1136, retro_etel_1244, retro_etel_138, retro_etel_1443, retro_etel_1530, retro_etel_1636, retro_etel_1739, retro_etel_1781, retro_etel_1947, retro_etel_2143, retro_etel_234, retro_etel_258, retro_etel_310 , retro_etel_377, retro_etel_466, retro_etel_546, retro_etel_56, retro_etel_579, retro_etel_581, retro_etel_582, retro_etel_76, retro_etel_776, retro_etel_799, retro_etel_80,
Felis catus ENSFCAG000000008732 retrocopies
retro_fcat_1836, retro_fcat_554,
Homo sapiens ENSG0000018200410 retrocopies
retro_hsap_130, retro_hsap_1668, retro_hsap_2022, retro_hsap_2073, retro_hsap_2287, retro_hsap_3262, retro_hsap_4228, retro_hsap_4660, retro_hsap_516, retro_hsap_576,
Gorilla gorilla ENSGGOG000000007557 retrocopies
retro_ggor_1462, retro_ggor_1626, retro_ggor_1700, retro_ggor_2221, retro_ggor_228, retro_ggor_2892, retro_ggor_91,
Loxodonta africana ENSLAFG000000093493 retrocopies
retro_lafr_796, retro_lafr_814, retro_lafr_873,
Macropus eugenii ENSMEUG000000152621 retrocopy
retro_meug_378,
Microcebus murinus ENSMICG000000155373 retrocopies
retro_mmur_1406, retro_mmur_453, retro_mmur_58,
Myotis lucifugus ENSMLUG000000132448 retrocopies
retro_mluc_1639, retro_mluc_1650, retro_mluc_1994, retro_mluc_2045, retro_mluc_2088, retro_mluc_2326, retro_mluc_85, retro_mluc_919,
Macaca mulatta ENSMMUG000000313728 retrocopies
retro_mmul_1039, retro_mmul_1258, retro_mmul_1576, retro_mmul_1790, retro_mmul_1820, retro_mmul_2054, retro_mmul_2480, retro_mmul_427,
Monodelphis domestica ENSMODG000000283943 retrocopies
retro_mdom_1164, retro_mdom_1790, retro_mdom_1865,
Mustela putorius furoENSMPUG000000116427 retrocopies
retro_mputfur_1078, retro_mputfur_1527, retro_mputfur_1634, retro_mputfur_53, retro_mputfur_638, retro_mputfur_729, retro_mputfur_949,
Mus musculus ENSMUSG0000009055310 retrocopies
retro_mmus_1527, retro_mmus_1597, retro_mmus_1704, retro_mmus_2090, retro_mmus_2788, retro_mmus_2953, retro_mmus_296, retro_mmus_3001, retro_mmus_3682, retro_mmus_898,
Otolemur garnettii ENSOGAG0000000430912 retrocopies
retro_ogar_2249, retro_ogar_2543, retro_ogar_2619, retro_ogar_2917, retro_ogar_3031, retro_ogar_3279, retro_ogar_748, retro_ogar_749, retro_ogar_750, retro_ogar_773, retro_ogar_774, retro_ogar_947,
Ochotona princeps ENSOPRG0000001541511 retrocopies
retro_opri_120, retro_opri_1215, retro_opri_314, retro_opri_359, retro_opri_450, retro_opri_453, retro_opri_580, retro_opri_601, retro_opri_613, retro_opri_786, retro_opri_856,
Pongo abelii ENSPPYG000000003268 retrocopies
retro_pabe_1375, retro_pabe_20, retro_pabe_2023, retro_pabe_228, retro_pabe_3015, retro_pabe_3620, retro_pabe_56, retro_pabe_610,
Pan troglodytes ENSPTRG0000003022411 retrocopies
retro_ptro_1131, retro_ptro_134, retro_ptro_1345, retro_ptro_1346, retro_ptro_1526, retro_ptro_1620, retro_ptro_2206, retro_ptro_2872, retro_ptro_3096, retro_ptro_385, retro_ptro_426,
Sorex araneus ENSSARG000000033119 retrocopies
retro_sara_171, retro_sara_173, retro_sara_183, retro_sara_214, retro_sara_219, retro_sara_37, retro_sara_664, retro_sara_697, retro_sara_750,
Sarcophilus harrisii ENSSHAG000000029781 retrocopy
retro_shar_357,
Sus scrofa ENSSSCG000000235623 retrocopies
retro_sscr_1159, retro_sscr_172, retro_sscr_606,
Vicugna pacos ENSVPAG000000111622 retrocopies
retro_vpac_469, retro_vpac_477,


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