RetrogeneDB ID: | retro_pabe_56 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3:110002184..110002460(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000014024 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000000326 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.65 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKS |
MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCI.GFDEYMNLVLDDAEE.HSKTKS | |
Retrocopy | MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIVGFDEYMNLVLDDAEEVHSKTKS |
Parental | RKQLGRIMLKGDNITLLQSVSN |
RKQLGRIMLKGDNITLL.S.SN | |
Retrocopy | RKQLGRIMLKGDNITLLRSFSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .11 RPM | 4 .64 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .69 RPM |
SRP007412_heart | 0 .24 RPM | 6 .11 RPM |
SRP007412_kidney | 0 .20 RPM | 7 .96 RPM |
SRP007412_liver | 0 .09 RPM | 6 .49 RPM |