RetrogeneDB ID: | retro_dnov_1362 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_18708:279..524(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000004490 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.35 % |
Parental protein coverage: | 89.13 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MAYRGQGQKVQKVMV-QPINLIFRYLQNRSRIQVWLYEQVNMRIE-GCII-GFDEYMNLVLDDAEEIHSK |
MAY.GQ...VQKVM...PINLIFRYLQNRSRIQVWLYEQVNMRIE.GCI..GFDE..NLVLDDAEEIHSK | |
Retrocopy | MAYYGQS*TVQKVMA>KPINLIFRYLQNRSRIQVWLYEQVNMRIE<GCIM<GFDEDLNLVLDDAEEIHSK |
Parental | TKSRKQLGRIMLKGD |
T.SRKQ.GR.MLKGD | |
Retrocopy | TMSRKQPGRVMLKGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 23 .92 RPM |
SRP012922_cerebellum | 0 .00 RPM | 12 .51 RPM |
SRP012922_heart | 0 .00 RPM | 8 .59 RPM |
SRP012922_kidney | 0 .00 RPM | 9 .31 RPM |
SRP012922_liver | 0 .00 RPM | 7 .43 RPM |
SRP012922_lung | 0 .00 RPM | 15 .27 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 8 .13 RPM |
SRP012922_spleen | 0 .00 RPM | 24 .15 RPM |