RetrogeneDB ID: | retro_pabe_2023 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2a_random:6917700..6917976(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000000326 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.48 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKS |
M.Y.GQGQKVQKVMVQPINLIFRYLQNRS.IQV.LYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKS | |
Retrocopy | MVYHGQGQKVQKVMVQPINLIFRYLQNRSQIQV*LYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKS |
Parental | RKQLGRIMLKGDNITLLQSVSN |
RKQLGR.MLKGDNI.LLQSVSN | |
Retrocopy | RKQLGRLMLKGDNIPLLQSVSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 4 .64 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .69 RPM |
SRP007412_heart | 0 .00 RPM | 6 .11 RPM |
SRP007412_kidney | 0 .03 RPM | 7 .96 RPM |
SRP007412_liver | 0 .18 RPM | 6 .49 RPM |