RetrogeneDB ID: | retro_ggor_1700 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 2a:86779625..86779899(-) | ||
Located in intron of: | ENSGGOG00000008549 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000182004 | ||
Ensembl ID: | ENSGGOG00000000755 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.02 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLV-LDDAEEIHSKTK |
MAY.GQGQKVQKVM.Q.INLIFRYLQNRS.IQVWLYEQVNMR.EGCIIGF.EYMNLV.LDDAEE.HSKTK | |
Retrocopy | MAYHGQGQKVQKVMAQTINLIFRYLQNRSQIQVWLYEQVNMRTEGCIIGFNEYMNLV>LDDAEESHSKTK |
Parental | SRKQLGRIMLKGDNITLLQSVSN |
.RKQLGRIMLKG..I.LLQSVS. | |
Retrocopy | ARKQLGRIMLKG-GIPLLQSVSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .10 RPM | 9 .30 RPM |
SRP007412_cerebellum | 0 .08 RPM | 10 .36 RPM |
SRP007412_heart | 0 .09 RPM | 3 .78 RPM |
SRP007412_kidney | 0 .16 RPM | 16 .85 RPM |
SRP007412_liver | 0 .21 RPM | 13 .16 RPM |
SRP007412_testis | 0 .10 RPM | 18 .96 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2287 |
Pan troglodytes | retro_ptro_1620 |
Macaca mulatta | retro_mmul_1039 |