RetrogeneDB ID: | retro_mdom_1164 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 3:302832547..302832715(-) | ||
Located in intron of: | ENSMODG00000012332 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPE | ||
Ensembl ID: | ENSMODG00000028394 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide E [Source:HGNC Symbol;Acc:11161] |
Percent Identity: | 60.71 % |
Parental protein coverage: | 60.87 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | IQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITL |
IQ.WL.EQVNM....CIIGF.EY.NL.LDD.EEI.S...SRK.....MLK.D.IT. | |
Retrocopy | IQMWLFEQVNMQMKACIIGFEEYTNLILDDWEEIYSXXXSRK*HTWNMLKEDHITI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |