RetrogeneDB - Parental gene ENSPPYG00000000326 details

							
>ENSPPYG00000000326
ATGGCGTACCGTGGCCAGGGCCAGAAAGTGCAGAAGGTTATGGTGCAGCCCATCAACCTCATCTTCAGATACTTACAAAA

TAGATCGCGGATTCAGGTGTGGCTCTATGAGCAAGTGAATATGCGGATAGAAGGCTGTATCATTGGTTTTGATGAGTATA

TGAACCTTGTATTAGATGATGCAGAAGAGATTCATTCTAAAACAAAGTCAAGAAAACAACTGGGTCGGATCATGCTAAAA

GGAGATAATATTACTCTGCTACAAAGTGTCTCCAACTAG

Library	Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex	4 .64 RPM
SRP007412_cerebellum	6 .69 RPM
SRP007412_heart	6 .11 RPM
SRP007412_kidney	7 .96 RPM
SRP007412_liver	6 .49 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000000882	possible_ortholog	8 retrogenes	retro_amel_1112, retro_amel_1206, retro_amel_1211, retro_amel_1293, retro_amel_1517, retro_amel_1530, retro_amel_185, retro_amel_412,
Choloepus hoffmanni	ENSCHOG00000009158	ortholog_one2many	6 retrogenes	retro_chof_139, retro_chof_1870, retro_chof_1897, retro_chof_1981, retro_chof_2652, retro_chof_450,
Callithrix jacchus	ENSCJAG00000006735	possible_ortholog	1 retrogene	retro_cjac_3163,
Dasypus novemcinctus	ENSDNOG00000004490	possible_ortholog	24 retrogenes	retro_dnov_1009, retro_dnov_1141, retro_dnov_122, retro_dnov_1223, retro_dnov_1312, retro_dnov_1314, retro_dnov_1362, retro_dnov_1438, retro_dnov_163, retro_dnov_191, retro_dnov_2398, retro_dnov_2671, retro_dnov_360, retro_dnov_414, retro_dnov_513, retro_dnov_579, retro_dnov_796, retro_dnov_828, retro_dnov_898, retro_dnov_900, retro_dnov_902, retro_dnov_93, retro_dnov_967, retro_dnov_983,
Erinaceus europaeus	ENSEEUG00000006187	possible_ortholog	6 retrogenes	retro_eeur_339, retro_eeur_497, retro_eeur_579, retro_eeur_613, retro_eeur_85, retro_eeur_92,
Echinops telfairi	ENSETEG00000014015	possible_ortholog	24 retrogenes	retro_etel_1136, retro_etel_1244, retro_etel_138, retro_etel_1443, retro_etel_1530, retro_etel_1636, retro_etel_1739, retro_etel_1781, retro_etel_1947, retro_etel_2143, retro_etel_234, retro_etel_258, retro_etel_310, retro_etel_377, retro_etel_466, retro_etel_546, retro_etel_56, retro_etel_579, retro_etel_581, retro_etel_582, retro_etel_76, retro_etel_776, retro_etel_799, retro_etel_80,
Felis catus	ENSFCAG00000000873	ortholog_one2many	2 retrogenes	retro_fcat_1836, retro_fcat_554,
Homo sapiens	ENSG00000182004	ortholog_one2many	10 retrogenes	retro_hsap_130, retro_hsap_1668, retro_hsap_2022, retro_hsap_2073, retro_hsap_2287, retro_hsap_3262, retro_hsap_4228, retro_hsap_4660, retro_hsap_516, retro_hsap_576,
Gorilla gorilla	ENSGGOG00000000755	possible_ortholog	7 retrogenes	retro_ggor_1462, retro_ggor_1626, retro_ggor_1700, retro_ggor_2221, retro_ggor_228, retro_ggor_2892, retro_ggor_91,
Loxodonta africana	ENSLAFG00000009349	possible_ortholog	3 retrogenes	retro_lafr_796, retro_lafr_814, retro_lafr_873,
Macropus eugenii	ENSMEUG00000015262	possible_ortholog	1 retrogene	retro_meug_378,
Microcebus murinus	ENSMICG00000015537	ortholog_one2many	3 retrogenes	retro_mmur_1406, retro_mmur_453, retro_mmur_58,
Myotis lucifugus	ENSMLUG00000013244	possible_ortholog	8 retrogenes	retro_mluc_1639, retro_mluc_1650, retro_mluc_1994, retro_mluc_2045, retro_mluc_2088, retro_mluc_2326, retro_mluc_85, retro_mluc_919,
Macaca mulatta	ENSMMUG00000031372	possible_ortholog	8 retrogenes	retro_mmul_1039, retro_mmul_1258, retro_mmul_1576, retro_mmul_1790, retro_mmul_1820, retro_mmul_2054, retro_mmul_2480, retro_mmul_427,
Monodelphis domestica	ENSMODG00000028394	ortholog_one2many	3 retrogenes	retro_mdom_1164, retro_mdom_1790, retro_mdom_1865,
Mustela putorius furo	ENSMPUG00000011642	possible_ortholog	7 retrogenes	retro_mputfur_1078, retro_mputfur_1527, retro_mputfur_1634, retro_mputfur_53, retro_mputfur_638, retro_mputfur_729, retro_mputfur_949,
Mus musculus	ENSMUSG00000090553	possible_ortholog	10 retrogenes	retro_mmus_1527, retro_mmus_1597, retro_mmus_1704, retro_mmus_2090, retro_mmus_2788, retro_mmus_2953, retro_mmus_296, retro_mmus_3001, retro_mmus_3682, retro_mmus_898,
Otolemur garnettii	ENSOGAG00000004309	possible_ortholog	12 retrogenes	retro_ogar_2249, retro_ogar_2543, retro_ogar_2619, retro_ogar_2917, retro_ogar_3031, retro_ogar_3279, retro_ogar_748, retro_ogar_749, retro_ogar_750, retro_ogar_773, retro_ogar_774, retro_ogar_947,
Ochotona princeps	ENSOPRG00000015415	possible_ortholog	11 retrogenes	retro_opri_120, retro_opri_1215, retro_opri_314, retro_opri_359, retro_opri_450, retro_opri_453, retro_opri_580, retro_opri_601, retro_opri_613, retro_opri_786, retro_opri_856,
Pan troglodytes	ENSPTRG00000030224	ortholog_one2many	11 retrogenes	retro_ptro_1131, retro_ptro_134, retro_ptro_1345, retro_ptro_1346, retro_ptro_1526, retro_ptro_1620, retro_ptro_2206, retro_ptro_2872, retro_ptro_3096, retro_ptro_385, retro_ptro_426,
Sorex araneus	ENSSARG00000003311	possible_ortholog	9 retrogenes	retro_sara_171, retro_sara_173, retro_sara_183, retro_sara_214, retro_sara_219, retro_sara_37, retro_sara_664, retro_sara_697, retro_sara_750,
Sarcophilus harrisii	ENSSHAG00000002978	possible_ortholog	1 retrogene	retro_shar_357,
Sus scrofa	ENSSSCG00000023562	possible_ortholog	3 retrogenes	retro_sscr_1159, retro_sscr_172, retro_sscr_606,
Vicugna pacos	ENSVPAG00000011162	possible_ortholog	2 retrogenes	retro_vpac_469, retro_vpac_477,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_pabe_20	95.65	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_pabe_56	95.65	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_pabe_228	79.57	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_pabe_610	58.06	67.39	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_pabe_1375	89.13	100.00	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_pabe_2023	93.48	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_pabe_3015	84.78	100.00	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_pabe_3620	73.42	82.61	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSPPYG00000000326 retrocopies

Parental gene:	ENSPPYG00000000326
Aliases:	None
Description:	None
Organism:	*Orangutan (Pongo abelii)*
Coordinates:	1:46341200..46349551(-)

Parental gene:

ENSPPYG00000000326