RetrogeneDB ID:

retro_dnov_967

Retrocopy
location
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_12805:80567..80792(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSDNOG00000004490
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_dnov_967
GTCCTCGCGGAAGGTACCGGCCTCGCTTTCAGGAAACTGAAAAGAGCGGTCCCGGATTCAGGTGTGGCTCTATGAGCAAG
TAAATATACGGATAGAGGGGTGCGTTACTGGTGTTGATGAGTACATGGACCCTGTTTAGATGATGCAGAAGAGAGGCATT
CTAAAAAAAAGTCAAGGAAACAGCTGGGTCAGATATTACTAAAAAGAGATAATATTACTCTGCTA

ORF - retro_dnov_967 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 67.53 %
Parental protein coverage: 81.52 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalVMVQPINLIFRYLQN-RSRIQVWLYEQVNMRIEGCIIGFDEYMNLV-LDDAEEIHSKTKSRKQLGRIMLK
V......L.FR.L...RSRIQVWLYEQVN.RIEGC..G.DEYM..V.LDDAEE.HS...SRKQLG.I.LK
RetrocopyVLAEGTGLAFRKLKR>RSRIQVWLYEQVNIRIEGCVTGVDEYMDPV<LDDAEERHSXXXSRKQLGQILLK
ParentalGDNITLL
.DNITLL
RetrocopyRDNITLL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP012922_ascending_colon 0 .00 RPM 23 .92 RPM
SRP012922_cerebellum 0 .00 RPM 12 .51 RPM
SRP012922_heart 0 .00 RPM 8 .59 RPM
SRP012922_kidney 0 .00 RPM 9 .31 RPM
SRP012922_liver 0 .00 RPM 7 .43 RPM
SRP012922_lung 0 .00 RPM 15 .27 RPM
SRP012922_quadricep_muscle 0 .00 RPM 8 .13 RPM
SRP012922_spleen 0 .00 RPM 24 .15 RPM
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_967 was not experimentally validated.

Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 25 parental genes, and 188 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000008828 retrocopies
Choloepus hoffmanni ENSCHOG000000091586 retrocopies
Callithrix jacchus ENSCJAG000000067351 retrocopy
Dasypus novemcinctus ENSDNOG00000004490 24 retrocopies
Erinaceus europaeus ENSEEUG000000061876 retrocopies
Echinops telfairi ENSETEG0000001401524 retrocopies
Felis catus ENSFCAG000000008732 retrocopies
Homo sapiens ENSG0000018200410 retrocopies
Gorilla gorilla ENSGGOG000000007557 retrocopies
Loxodonta africana ENSLAFG000000093493 retrocopies
Macropus eugenii ENSMEUG000000152621 retrocopy
Microcebus murinus ENSMICG000000155373 retrocopies
Myotis lucifugus ENSMLUG000000132448 retrocopies
Macaca mulatta ENSMMUG000000313728 retrocopies
Monodelphis domestica ENSMODG000000283943 retrocopies
Mustela putorius furoENSMPUG000000116427 retrocopies
Mus musculus ENSMUSG0000009055310 retrocopies
Otolemur garnettii ENSOGAG0000000430912 retrocopies
Ochotona princeps ENSOPRG0000001541511 retrocopies
Pongo abelii ENSPPYG000000003268 retrocopies
Pan troglodytes ENSPTRG0000003022411 retrocopies
Sorex araneus ENSSARG000000033119 retrocopies
Sarcophilus harrisii ENSSHAG000000029781 retrocopy
Sus scrofa ENSSSCG000000235623 retrocopies
Vicugna pacos ENSVPAG000000111622 retrocopies



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