RetrogeneDB ID:

retro_pabe_610

Retrocopy
location
Organism:Orangutan (Pongo abelii)
Coordinates:10:83253990..83254173(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSPPYG00000000326
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_pabe_610
GTGCCTGTGTGGCTCTGTAAGCAAATAAATATGCAAATAATGAGCTATATCATTGGTTTCAATTAACATATGAACCTTGC
ATTAGATGATGAGGAAGGGATTATTTTAAAGCAGTCAAGAAAACAACTAGATTACATTATGCTAAAAGGAGATATTATTG
CTTTGGTATAAAATGTCTCCAAC

ORF - retro_pabe_610 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 58.06 %
Parental protein coverage: 67.39 %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVSN
..VWL..Q.NM.I...IIGF...MNL.LDD.E.I..K..SRKQL..IMLKGD.I.L...VSN
RetrocopyVPVWLCKQINMQIMSYIIGFN*HMNLALDDEEGIILK-QSRKQLDYIMLKGDIIALV*NVSN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 4 .64 RPM
SRP007412_cerebellum 0 .00 RPM 6 .69 RPM
SRP007412_heart 0 .00 RPM 6 .11 RPM
SRP007412_kidney 0 .00 RPM 7 .96 RPM
SRP007412_liver 0 .00 RPM 6 .49 RPM
Pongo abelii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_pabe_610 retrocopy.
Pongo abelii was not studied using FANTOM5 data.
retro_pabe_610 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_pabe_610 has 2 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_576
Pan troglodytes retro_ptro_426

Parental genes homology:
Parental genes homology involve 25 parental genes, and 188 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000008828 retrocopies
Choloepus hoffmanni ENSCHOG000000091586 retrocopies
Callithrix jacchus ENSCJAG000000067351 retrocopy
Dasypus novemcinctus ENSDNOG0000000449024 retrocopies
Erinaceus europaeus ENSEEUG000000061876 retrocopies
Echinops telfairi ENSETEG0000001401524 retrocopies
Felis catus ENSFCAG000000008732 retrocopies
Homo sapiens ENSG0000018200410 retrocopies
Gorilla gorilla ENSGGOG000000007557 retrocopies
Loxodonta africana ENSLAFG000000093493 retrocopies
Macropus eugenii ENSMEUG000000152621 retrocopy
Microcebus murinus ENSMICG000000155373 retrocopies
Myotis lucifugus ENSMLUG000000132448 retrocopies
Macaca mulatta ENSMMUG000000313728 retrocopies
Monodelphis domestica ENSMODG000000283943 retrocopies
Mustela putorius furoENSMPUG000000116427 retrocopies
Mus musculus ENSMUSG0000009055310 retrocopies
Otolemur garnettii ENSOGAG0000000430912 retrocopies
Ochotona princeps ENSOPRG0000001541511 retrocopies
Pongo abelii ENSPPYG00000000326 8 retrocopies
Pan troglodytes ENSPTRG0000003022411 retrocopies
Sorex araneus ENSSARG000000033119 retrocopies
Sarcophilus harrisii ENSSHAG000000029781 retrocopy
Sus scrofa ENSSSCG000000235623 retrocopies
Vicugna pacos ENSVPAG000000111622 retrocopies



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