Parental gene:

ENSDNOG00000004490

Aliases:None
Description:None
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_2453:150330..154586(+)


>ENSDNOG00000004490
ATGGCTTACCGTGGCCAGGGCCAAAAAGTGCAGAAGGTGATGGTGCAGCCCATCAACCTCATCTTCAGATATTTGCAAAA
TAGATCCCGGATTCAGGTGTGGCTCTATGAGCAAGTAAATATGCGGATAGAAGGGTGTATTATTGGTTTTGATGAGTACA
TGAACCTCGTATTAGATGATGCAGAAGAAATTCATTCTAAAACAAAGTCAAGAAAACAACTGGGTCGGATCATGCTAAAA
GGAGATAATATTACTCTGCTACAAAGTGTTTCCAACTAG

Library Parental gene expression (RPM)
SRP012922_ascending_colon 23 .92 RPM
SRP012922_cerebellum 12 .51 RPM
SRP012922_heart 8 .59 RPM
SRP012922_kidney 9 .31 RPM
SRP012922_liver 7 .43 RPM
SRP012922_lung 15 .27 RPM
SRP012922_quadricep_muscle 8 .13 RPM
SRP012922_spleen 24 .15 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000882 possible_ortholog 8 retrogenes
retro_amel_1112, retro_amel_1206, retro_amel_1211, retro_amel_1293, retro_amel_1517, retro_amel_1530, retro_amel_185, retro_amel_412,
Choloepus hoffmanni ENSCHOG00000009158 possible_ortholog 6 retrogenes
retro_chof_139, retro_chof_1870, retro_chof_1897, retro_chof_1981, retro_chof_2652, retro_chof_450,
Callithrix jacchus ENSCJAG00000006735 possible_ortholog 1 retrogene
retro_cjac_3163,
Erinaceus europaeus ENSEEUG00000006187 possible_ortholog 6 retrogenes
retro_eeur_339, retro_eeur_497, retro_eeur_579, retro_eeur_613, retro_eeur_85, retro_eeur_92,
Echinops telfairi ENSETEG00000014015 possible_ortholog 24 retrogenes
retro_etel_1136, retro_etel_1244, retro_etel_138, retro_etel_1443, retro_etel_1530, retro_etel_1636, retro_etel_1739, retro_etel_1781, retro_etel_1947, retro_etel_2143, retro_etel_234, retro_etel_258, retro_etel_310, retro_etel_377, retro_etel_466, retro_etel_546, retro_etel_56, retro_etel_579, retro_etel_581, retro_etel_582, retro_etel_76, retro_etel_776, retro_etel_799, retro_etel_80,
Felis catus ENSFCAG00000000873 possible_ortholog 2 retrogenes
retro_fcat_1836, retro_fcat_554,
Homo sapiens ENSG00000182004 possible_ortholog 10 retrogenes
retro_hsap_130, retro_hsap_1668, retro_hsap_2022, retro_hsap_2073, retro_hsap_2287, retro_hsap_3262, retro_hsap_4228, retro_hsap_4660, retro_hsap_516, retro_hsap_576,
Gorilla gorilla ENSGGOG00000000755 possible_ortholog 7 retrogenes
retro_ggor_1462, retro_ggor_1626, retro_ggor_1700, retro_ggor_2221, retro_ggor_228, retro_ggor_2892, retro_ggor_91,
Loxodonta africana ENSLAFG00000009349 ortholog_one2one 3 retrogenes
retro_lafr_796, retro_lafr_814, retro_lafr_873,
Macropus eugenii ENSMEUG00000015262 possible_ortholog 1 retrogene
retro_meug_378,
Microcebus murinus ENSMICG00000015537 possible_ortholog 3 retrogenes
retro_mmur_1406, retro_mmur_453, retro_mmur_58,
Myotis lucifugus ENSMLUG00000013244 possible_ortholog 8 retrogenes
retro_mluc_1639, retro_mluc_1650, retro_mluc_1994, retro_mluc_2045, retro_mluc_2088, retro_mluc_2326, retro_mluc_85, retro_mluc_919,
Macaca mulatta ENSMMUG00000031372 possible_ortholog 8 retrogenes
retro_mmul_1039, retro_mmul_1258, retro_mmul_1576, retro_mmul_1790, retro_mmul_1820, retro_mmul_2054, retro_mmul_2480, retro_mmul_427,
Monodelphis domestica ENSMODG00000028394 possible_ortholog 3 retrogenes
retro_mdom_1164, retro_mdom_1790, retro_mdom_1865,
Mustela putorius furo ENSMPUG00000011642 possible_ortholog 7 retrogenes
retro_mputfur_1078, retro_mputfur_1527, retro_mputfur_1634, retro_mputfur_53, retro_mputfur_638, retro_mputfur_729, retro_mputfur_949,
Mus musculus ENSMUSG00000090553 possible_ortholog 10 retrogenes
retro_mmus_1527, retro_mmus_1597, retro_mmus_1704, retro_mmus_2090, retro_mmus_2788, retro_mmus_2953, retro_mmus_296, retro_mmus_3001, retro_mmus_3682, retro_mmus_898,
Otolemur garnettii ENSOGAG00000004309 possible_ortholog 12 retrogenes
retro_ogar_2249, retro_ogar_2543, retro_ogar_2619, retro_ogar_2917, retro_ogar_3031, retro_ogar_3279, retro_ogar_748, retro_ogar_749, retro_ogar_750, retro_ogar_773, retro_ogar_774, retro_ogar_947,
Ochotona princeps ENSOPRG00000015415 ortholog_one2one 11 retrogenes
retro_opri_120, retro_opri_1215, retro_opri_314, retro_opri_359, retro_opri_450, retro_opri_453, retro_opri_580, retro_opri_601, retro_opri_613, retro_opri_786, retro_opri_856,
Pongo abelii ENSPPYG00000000326 possible_ortholog 8 retrogenes
retro_pabe_1375, retro_pabe_20, retro_pabe_2023, retro_pabe_228, retro_pabe_3015, retro_pabe_3620, retro_pabe_56, retro_pabe_610,
Pan troglodytes ENSPTRG00000030224 possible_ortholog 11 retrogenes
retro_ptro_1131, retro_ptro_134, retro_ptro_1345, retro_ptro_1346, retro_ptro_1526, retro_ptro_1620, retro_ptro_2206, retro_ptro_2872, retro_ptro_3096, retro_ptro_385, retro_ptro_426,
Sorex araneus ENSSARG00000003311 ortholog_one2one 9 retrogenes
retro_sara_171, retro_sara_173, retro_sara_183, retro_sara_214, retro_sara_219, retro_sara_37, retro_sara_664, retro_sara_697, retro_sara_750,
Sarcophilus harrisii ENSSHAG00000002978 possible_ortholog 1 retrogene
retro_shar_357,
Sus scrofa ENSSSCG00000023562 possible_ortholog 3 retrogenes
retro_sscr_1159, retro_sscr_172, retro_sscr_606,
Vicugna pacos ENSVPAG00000011162 possible_ortholog 2 retrogenes
retro_vpac_469, retro_vpac_477,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_93 89.13 100.00
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2. retro_dnov_122 91.21 98.91
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3. retro_dnov_163 78.72 100.00
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4. retro_dnov_191 87.69 70.65
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5. retro_dnov_360 98.91 100.00
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6. retro_dnov_414 92.31 97.83
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7. retro_dnov_513 72.50 86.96
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8. retro_dnov_579 89.13 98.91
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9. retro_dnov_796 93.48 100.00
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10. retro_dnov_828 66.25 85.87
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11. retro_dnov_898 76.81 73.91
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12. retro_dnov_900 94.19 93.48
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13. retro_dnov_902 79.35 100.00
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14. retro_dnov_967 67.53 81.52
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15. retro_dnov_983 68.00 54.35
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16. retro_dnov_1009 72.86 73.91
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17. retro_dnov_1141 68.06 76.09
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18. retro_dnov_1223 76.81 75.00
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19. retro_dnov_1312 75.41 65.22
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20. retro_dnov_1314 76.39 76.09
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21. retro_dnov_1362 82.35 89.13
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22. retro_dnov_1438 82.19 78.26
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23. retro_dnov_2398 71.43 73.91
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24. retro_dnov_2671 66.67 76.09
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Download FASTA sequences of all ENSDNOG00000004490 retrocopies