RetrogeneDB ID: | retro_amel_929 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192753.1:344776..345469(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTG1 | ||
Ensembl ID: | ENSAMEG00000016015 | ||
Aliases: | None | ||
Description: | actin, gamma 1 [Source:HGNC Symbol;Acc:144] |
Percent Identity: | 76.92 % |
Parental protein coverage: | 62.13 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | YASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI |
YASG.TTGIVMDS.D.VTHTVPIYEG..LPHAIL.LD...R....YL.KIL.E.GYSFTTTAE.EIV.DI | |
Retrocopy | YASGHTTGIVMDSEDEVTHTVPIYEGHTLPHAILCLDWLDRS---YLLKILMEGGYSFTTTAEWEIVHDI |
Parental | KEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSI |
KEKLCY.ALDF.QEMA...SSSSLEKSYELP.GQVIT.GNE.F.CP..LFQPSFLGMESCGIHETTFNSI | |
Retrocopy | KEKLCYIALDFKQEMAIISSSSSLEKSYELPGGQVITSGNEGFPCPKVLFQPSFLGMESCGIHETTFNSI |
Parental | MKCDVDIRKDLYANTVLSGGTTMYPGIADRMQ-KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST |
MKCD.DI.KD.Y.NTVLSGG.TMY..IAD.MQ....TALAPS.MKIKI..P.E.KYS..IGGSILAS.ST | |
Retrocopy | MKCDIDIQKDHYTNTVLSGGSTMYSSIADKMQMQKTTALAPSMMKIKITSPLEHKYSASIGGSILASRST |
Parental | FQQMWISKQEYDESGPSIVHRKCF |
FQQ.WISKQEYDE.GPS.VH..CF | |
Retrocopy | FQQIWISKQEYDELGPSTVHHICF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |