RetrogeneDB ID: | retro_hsap_1548 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 15:34665784..34666389(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000259904 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTG1 | ||
Ensembl ID: | ENSG00000184009 | ||
Aliases: | ACTG1, ACT, ACTG, BRWS2, DFNA20, DFNA26, HEL-176 | ||
Description: | actin, gamma 1 [Source:HGNC Symbol;Acc:144] |
Percent Identity: | 75.12 % |
Parental protein coverage: | 53.87 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | TVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA |
T.P.Y.GY.LP.AIL.LDLAG.DLTDY..KILTERGYSFTTTA..EI.RDIK.KL.Y.ALDF..EMAT.. | |
Retrocopy | TLPNYKGYTLPSAILCLDLAGWDLTDYFTKILTERGYSFTTTAQQEIMRDIKKKLRYIALDFK*EMATMS |
Parental | SSSSLEKSYELPDGQVITIGNERFRCPEA-LFQPSFLGMESC-GIHETTFNSIMKCDVDIRKDLYANTVL |
SS.SLEKSY.L...QVI.I.N..F.CP...L.QPSFLGME....IHETTFNSIMKCDVDI.K.LYAN.VL | |
Retrocopy | SSFSLEKSYKLLQSQVIDICNK*FHCPGL<LLQPSFLGMEPV<DIHETTFNSIMKCDVDIHKGLYANAVL |
Parental | SGGTTMYPGIA-DRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYD |
S.GTTMYPGIA..RMQKEITALAPS.MKIKIIAP.E.KYS..I.GSILASLSTFQQMWIS.QEY. | |
Retrocopy | SSGTTMYPGIA>NRMQKEITALAPSMMKIKIIAPAECKYSMCIIGSILASLSTFQQMWISRQEYE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 1801 .72 RPM |
bodymap2_adrenal | 0 .06 RPM | 1297 .48 RPM |
bodymap2_brain | 0 .00 RPM | 718 .46 RPM |
bodymap2_breast | 0 .00 RPM | 980 .46 RPM |
bodymap2_colon | 0 .00 RPM | 1470 .98 RPM |
bodymap2_heart | 0 .02 RPM | 195 .06 RPM |
bodymap2_kidney | 0 .02 RPM | 891 .95 RPM |
bodymap2_liver | 0 .00 RPM | 755 .38 RPM |
bodymap2_lung | 0 .00 RPM | 2935 .37 RPM |
bodymap2_lymph_node | 0 .00 RPM | 1199 .50 RPM |
bodymap2_ovary | 0 .04 RPM | 2319 .78 RPM |
bodymap2_prostate | 0 .00 RPM | 1597 .02 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 354 .63 RPM |
bodymap2_testis | 0 .00 RPM | 1156 .51 RPM |
bodymap2_thyroid | 0 .04 RPM | 1262 .62 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 2004 .26 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .06 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .05 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .09 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .08 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .04 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .05 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .06 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .06 RPM |
GBR_HG00133 | 0 .07 RPM |
GBR_HG00134 | 0 .04 RPM |
GBR_HG00137 | 0 .05 RPM |
GBR_HG00142 | 0 .06 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .10 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .08 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .02 RPM |
YRI_NA19223 | 0 .06 RPM |