RetrogeneDB ID: | retro_hsap_4935 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | Y:19868883..19870005(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000229129 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTG1 | ||
Ensembl ID: | ENSG00000184009 | ||
Aliases: | ACTG1, ACT, ACTG, BRWS2, DFNA20, DFNA26, HEL-176 | ||
Description: | actin, gamma 1 [Source:HGNC Symbol;Acc:144] |
Percent Identity: | 84.8 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP |
.EEEIAALVIDNGS.MCKAGFAGDDAP.A.FPS.VG.P.HQGVMV.MGQKDSYVG.EAQSKR.ILTLKYP | |
Retrocopy | VEEEIAALVIDNGSCMCKAGFAGDDAPQAMFPSTVGFPGHQGVMVDMGQKDSYVGNEAQSKRSILTLKYP |
Parental | IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL |
I.HGI.TNWD.MEKIWHH.FYNEL..APE..PVLLTE.PLNPK.NREKMTQIMFETFNTPAMYVAI..VL | |
Retrocopy | IKHGIITNWDNMEKIWHH-FYNELHGAPE*QPVLLTEDPLNPKDNREKMTQIMFETFNTPAMYVAIRDVL |
Parental | SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR |
SLYA.GRTTGIVMD.G..VTHTVPIYEGY.LPHAIL.LDL.G.DLT.YL.KIL.ERGYSFT.TA.REI.R | |
Retrocopy | SLYAFGRTTGIVMDCGHRVTHTVPIYEGYSLPHAILHLDLTGWDLTEYLKKILKERGYSFTNTAQREIMR |
Parental | DIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFN |
DIKEKLC.V.LDF.QEMAT.ASSSSLEKSYELPDGQVITIGNE.F.CPE.LFQPSF..MESC.IH.TT.N | |
Retrocopy | DIKEKLC*VSLDFKQEMATPASSSSLEKSYELPDGQVITIGNEWFWCPEVLFQPSFPCMESCRIHQTTIN |
Parental | SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS |
SI.KCDVDIRKDLY.NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK.SVWIG.SIL.SL. | |
Retrocopy | SIKKCDVDIRKDLYTNTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKFSVWIGCSILNSLV |
Parental | TFQQMWISKQEYDESGPSIVHRKCF |
TFQQ.WISKQEYDESGP.IVH.KCF | |
Retrocopy | TFQQTWISKQEYDESGPYIVHHKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 1801 .72 RPM |
bodymap2_adrenal | 0 .02 RPM | 1297 .48 RPM |
bodymap2_brain | 0 .00 RPM | 718 .46 RPM |
bodymap2_breast | 0 .00 RPM | 980 .46 RPM |
bodymap2_colon | 0 .00 RPM | 1470 .98 RPM |
bodymap2_heart | 0 .00 RPM | 195 .06 RPM |
bodymap2_kidney | 0 .00 RPM | 891 .95 RPM |
bodymap2_liver | 0 .00 RPM | 755 .38 RPM |
bodymap2_lung | 0 .00 RPM | 2935 .37 RPM |
bodymap2_lymph_node | 0 .00 RPM | 1199 .50 RPM |
bodymap2_ovary | 0 .00 RPM | 2319 .78 RPM |
bodymap2_prostate | 0 .00 RPM | 1597 .02 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 354 .63 RPM |
bodymap2_testis | 0 .02 RPM | 1156 .51 RPM |
bodymap2_thyroid | 0 .00 RPM | 1262 .62 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 2004 .26 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .03 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |