RetrogeneDB ID:

retro_mputfur_279

Retrocopy
location
Organism:Ferret (Mustela putorius furo)
Coordinates:GL896901.1:17582761..17583881(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ACTG1
Ensembl ID:ENSMPUG00000011610
Aliases:None
Description:actin, gamma 1 [Source:HGNC Symbol;Acc:144]


Retrocopy-Parental alignment summary:






>retro_mputfur_279
ATGGAAGAGGAGATGATTGCGCTCGCCGTCCACTATGGCCCCAGGATGTGCAAGGCAGACTTTGCCGGGGATGGTTCCCA
CCCGAGCTACGCTCCTGTCCATCGTCGGGTGATCCCGACACCAGGGCGTGATGGTTGGAATGGGCCAAAAGGACTCTTAC
ATTGGCGACAAGGCCCAGAGCAAGCGGGGCATCCTGACCCTCCCGTACCCCGTCGAGCACGGCACTGTCACCAACTGAGA
CAATGTGGAGATCTGGCACCATACCTTCCACAACGAGCTGCGCATGGCCCCTGAGGAGCACCCGTGCTGCTGACCGAGGC
CCCCGGAACCCCAAGGGCAACTGTGGGATGACTCAGATCATTTTTGAGACCTTCAACACCCCAGGCATGTATGTGGTCAT
CCGGGCTGTGCTGTCCCTGCATGGCTCTGGCCGCACCACTGGTCTTGTCATGGACTCTGGGGACAGGGTCACCCACACTG
TGCCCATCTTCGCAGGGTACGCCCTGCCCCCGCGCCATCCTGCGTCAGGACCTAGCTGGCCGGGACCTGACGGACTAGTT
TATGAAGAGCCTCTCCGAGTGTGGCTGCCGCTTCGCCGCCGCCGCCGCGTAGCGGGGAATAGTGCGTGACATCAAGGGGA
AGCTCTGCTCGGTCGTCCTGGACGTCGAGCAGGAGATGGTCACGGCCGTGTCCTCCTCCTCCCTGGAGAAGAGCTATGAG
CTGCCCCACAAGGCAGGTGATCACTGTCCGGAGCGAGCAGTTCCGCTGCCCGCAGGCGCTCTTCCAGCCTTCCTTCCTGG
GGATGGGGTCGGGTAGTGTCCACGAGACCACCTTCCGCTCCATCAGAAGTGTGACGTCGACATCCGGAAGGCCCTCTATG
CTCGCGCGGTGCTGCGGGGCGGGGCCACCGTGTACCCCTGCATCGCCGACAGGATGCAGAAGATCACAACTCTGGCGCCA
AGCACCATGAAGGTCAAGATCACCGCTCCTCCGGAACGCAAGTCCTGGGTGTGGGTCGGGGGCGCCCTCCCGGCCTCGCT
GTCCACCTCCCAGCAGATGTGGATCAGCAAGCAGGAGGATGTTGGAGTCGGGCCCCTCCGTTGTGCACTGTAAATACTTT

ORF - retro_mputfur_279 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 72.06 %
Parental protein coverage: 100.0 %
Number of stop codons detected: 4
Number of frameshifts detected: 7


Retrocopy - Parental Gene Alignment:

ParentalMEEEIAALVIDNGSGMCKAGFAGDDA-PRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY
MEEE..AL....G..MCKA.FAGD....RA...SIVG..RHQGVMVGMGQKDSY.GD.AQSKRGILTL.Y
RetrocopyMEEEMIALAVHYGPRMCKADFAGDGS>TRATLLSIVG*SRHQGVMVGMGQKDSYIGDKAQSKRGILTLPY
ParentalPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP-VLLTEAP-LNPKANREKMTQIMFETFNTPAMYVAIQ
P.EHG.VTN.D..E.IWHHTF.NELR.APEEHP.VLLTEAP..NPK.N...MTQI.FETFNTP.MYV.I.
RetrocopyPVEHGTVTN*DNVE-IWHHTFHNELRMAPEEHP<VLLTEAP<RNPKGNCG-MTQIIFETFNTPGMYVVIR
ParentalAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYAL-PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAE-
AVLSL..SGRTTG.VMDSGD.VTHTVPI..GYAL.P.AILR.DLAGRDLTD..MK.L.E.G..F...A..
RetrocopyAVLSLHGSGRTTGLVMDSGDRVTHTVPIFAGYAL>PRAILRQDLAGRDLTD*FMKSLSECGCRFAAAAA*
ParentalREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL-PDGQVITIGNERFRCPEALFQPSFLGMESCGI
R.IVRDIK.KLC.V.LD.EQEM.TA.SSSSLEKSYEL.P..QVIT...E.FRCP.ALFQPSFLGM.S...
RetrocopyRGIVRDIKGKLCSVVLDVEQEMVTAVSSSSLEKSYEL>PTRQVITVRSEQFRCPQALFQPSFLGMGSGSV
ParentalHETTFNSI-MKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGG
HETTF.SI..KCDVDIRK.LYA..VL.GG.T.YP.IADRMQK.IT.LAPSTMK.KI.APPERK..VW.GG
RetrocopyHETTFRSI<QKCDVDIRKALYARAVLRGGATVYPCIADRMQK-ITTLAPSTMKVKITAPPERKSWVWVGG
ParentalSILASLSTFQQMWISKQE-YDESGPSIVHRKCF
...ASLST.QQMWISKQE...ESGPS.VH.K.F
RetrocopyALPASLSTSQQMWISKQE>MLESGPSVVHCKYF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Mustela putorius furo was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_mputfur_279 retrocopy.

TSS - click to see more details

Mustela putorius furo was not studied using FANTOM5 data.

Lab - click to see more details

retro_mputfur_279 was not experimentally validated.

Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 25 parental genes, and 67 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000152383 retrocopies
retro_acar_176, retro_acar_199, retro_acar_7,
Ailuropoda melanoleuca ENSAMEG000000160151 retrocopy
retro_amel_929,
Callithrix jacchus ENSCJAG000000028853 retrocopies
retro_cjac_139, retro_cjac_336, retro_cjac_377,
Cavia porcellus ENSCPOG000000121011 retrocopy
retro_cpor_361,
Equus caballus ENSECAG000000186001 retrocopy
retro_ecab_98,
Felis catus ENSFCAG000000264342 retrocopies
retro_fcat_257, retro_fcat_377,
Homo sapiens ENSG0000018400910 retrocopies
retro_hsap_1548, retro_hsap_1607, retro_hsap_2405, retro_hsap_2591, retro_hsap_2605, retro_hsap_3466, retro_hsap_3631, retro_hsap_409, retro_hsap_4818, retro_hsap_4935,
Gallus gallus ENSGALG000000287491 retrocopy
retro_ggal_6,
Gorilla gorilla ENSGGOG000000140436 retrocopies
retro_ggor_1495, retro_ggor_2338, retro_ggor_2449, retro_ggor_273, retro_ggor_413, retro_ggor_520,
Loxodonta africana ENSLAFG000000091671 retrocopy
retro_lafr_116,
Monodelphis domestica ENSMODG000000026473 retrocopies
retro_mdom_187, retro_mdom_59, retro_mdom_89,
Mustela putorius furoENSMPUG00000011610 1 retrocopy
retro_mputfur_279 ,
Mustela putorius furoENSMPUG000000166122 retrocopies
retro_mputfur_440, retro_mputfur_461,
Mus musculus ENSMUSG000000628257 retrocopies
retro_mmus_1043, retro_mmus_1524, retro_mmus_2383, retro_mmus_3128, retro_mmus_3265, retro_mmus_3607, retro_mmus_3705,
Nomascus leucogenys ENSNLEG000000155063 retrocopies
retro_nleu_1525, retro_nleu_1536, retro_nleu_1930,
Oryctolagus cuniculus ENSOCUG000000058671 retrocopy
retro_ocun_720,
Petromyzon marinus ENSPMAG000000041611 retrocopy
retro_pmar_4,
Pongo abelii ENSPPYG0000000873511 retrocopies
retro_pabe_1091, retro_pabe_1391, retro_pabe_1727, retro_pabe_2187, retro_pabe_2308, retro_pabe_2621, retro_pabe_2945, retro_pabe_3381, retro_pabe_3475, retro_pabe_3760, retro_pabe_600,
Pelodiscus sinensis ENSPSIG000000021022 retrocopies
retro_psin_25, retro_psin_4,
Rattus norvegicus ENSRNOG000000367011 retrocopy
retro_rnor_715,
Sorex araneus ENSSARG000000121971 retrocopy
retro_sara_267,
Sus scrofa ENSSSCG000000283551 retrocopy
retro_sscr_389,
Ictidomys tridecemlineatus ENSSTOG000000068682 retrocopies
retro_itri_1675, retro_itri_531,
Tupaia belangeri ENSTBEG000000107811 retrocopy
retro_tbel_422,
Xenopus tropicalis ENSXETG000000251161 retrocopy
retro_xtro_6,


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