RetrogeneDB ID: | retro_acar_176 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343316.1:954666..955782(-) | ||
Located in intron of: | ENSACAG00000017076 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTG1 | ||
Ensembl ID: | ENSACAG00000015238 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.67 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP |
M...IAALV.DN.SG.CKAGFAGDDAPRAVFPSIVG..RHQGV...MGQKDSYVGDE.Q.KR.ILTLKYP | |
Retrocopy | MDNDIAALVVDNVSGICKAGFAGDDAPRAVFPSIVGHLRHQGV---MGQKDSYVGDEVQNKRDILTLKYP |
Parental | IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL |
IEH.IVTNWD.MEKIWHHTFYN.LRVAPEEHP.LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL | |
Retrocopy | IEHCIVTNWDNMEKIWHHTFYNKLRVAPEEHPMLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL |
Parental | SLYASG-TTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR |
SLYASG.TTGIVMDSGDG.THTVPIY.GYALPHAIL.LDLAGRDLTDYLMKILTERGYSFTTTA.REIVR | |
Retrocopy | SLYASGCTTGIVMDSGDGITHTVPIYAGYALPHAILCLDLAGRDLTDYLMKILTERGYSFTTTAKREIVR |
Parental | DIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFN |
DIKEKLCYVALDFEQEMAT.ASSSSLEKSYELPD.QVITIGN.RFRCPEALFQPSFLGMESCGI.ETTFN | |
Retrocopy | DIKEKLCYVALDFEQEMATVASSSSLEKSYELPDRQVITIGNKRFRCPEALFQPSFLGMESCGIQETTFN |
Parental | SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS |
SIM.CDVDIRKDLYANTVLSGG.TMYPGIADRM.KEITALAPSTMKIKIIAPPE.KYSVWIGGSI..SLS | |
Retrocopy | SIMQCDVDIRKDLYANTVLSGGNTMYPGIADRM*KEITALAPSTMKIKIIAPPECKYSVWIGGSIFTSLS |
Parental | TFQQMWISKQEYDESGPSIVHRKCF |
TFQQM..SKQEYDESGPSIVHRKCF | |
Retrocopy | TFQQM*VSKQEYDESGPSIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 13 .82 RPM | 2616 .14 RPM |
SRP009831_brain | 3 .69 RPM | 1706 .37 RPM |
SRP009831_dewlap | 2 .74 RPM | 2044 .29 RPM |
SRP009831_embryo | 30 .56 RPM | 3431 .76 RPM |
SRP009831_heart | 4 .77 RPM | 891 .39 RPM |
SRP009831_liver | 15 .91 RPM | 1343 .35 RPM |
SRP009831_lung | 34 .25 RPM | 1634 .50 RPM |
SRP009831_ovary | 3 .63 RPM | 1631 .70 RPM |
SRP009831_skeletal_muscle | 1 .27 RPM | 188 .12 RPM |