RetrogeneDB ID: | retro_hsap_3466 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 6:46172714..46173829(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000229349 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTG1 | ||
Ensembl ID: | ENSG00000184009 | ||
Aliases: | ACTG1, ACT, ACTG, BRWS2, DFNA20, DFNA26, HEL-176 | ||
Description: | actin, gamma 1 [Source:HGNC Symbol;Acc:144] |
Percent Identity: | 84.08 % |
Parental protein coverage: | 99.47 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | MEEEIAALVIDNGSGMCKAG-FAG-DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLK |
MEEEI.AL.IDNGSGM.KA..FAG.D.A.RA.FPSI.G.PRHQGVMVGMGQKDSYVGD.AQSK.GILTLK | |
Retrocopy | MEEEIPALFIDNGSGM*KAA<FAG<DNALRAIFPSIIGHPRHQGVMVGMGQKDSYVGDQAQSKCGILTLK |
Parental | YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQA |
YPI.HGIVTNWDDMEKIWHH.FYNEL.VA.EE..VLLTEAPLNP.ANREKMTQIMF.TFNT.AMYVAIQA | |
Retrocopy | YPIKHGIVTNWDDMEKIWHHVFYNELCVALEEQVVLLTEAPLNPRANREKMTQIMFKTFNTQAMYVAIQA |
Parental | VLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI |
VL.L..SG.TTGIVMDSGDGVTHTVPIYE...LPH.IL.LDLAG.DLTDYLMKI.T.R.YSF.T.A...I | |
Retrocopy | VLTLHSSGCTTGIVMDSGDGVTHTVPIYERHTLPHTILHLDLAGQDLTDYLMKIPT*RSYSFNTMAKWKI |
Parental | VRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP-EALFQPSFLGMESCGIHET |
VR.IKEKLCYVALDFE.EMATAASSSSLEKSYELPD.Q.I.I.NERFRCP.EALFQPSFLGMESCGIHE. | |
Retrocopy | VRNIKEKLCYVALDFE*EMATAASSSSLEKSYELPDSQAIIISNERFRCP<EALFQPSFLGMESCGIHES |
Parental | TFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKI-IAPPERKYSVWIGGSIL |
TFNSIMKCD.DI.KDLYANTVLSG.TTMYPGI..RMQKEITALA.STMKIKI.I.PPE.KY.VWIGGSIL | |
Retrocopy | TFNSIMKCDMDIPKDLYANTVLSGVTTMYPGIPNRMQKEITALASSTMKIKI<IVPPECKYFVWIGGSIL |
Parental | ASLSTFQQMWISKQEYDESGPSIVHRK |
ASLSTFQQMWISKQEY.ESGPSI.HRK | |
Retrocopy | ASLSTFQQMWISKQEYNESGPSIIHRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 1801 .72 RPM |
bodymap2_adrenal | 0 .00 RPM | 1297 .48 RPM |
bodymap2_brain | 0 .00 RPM | 718 .46 RPM |
bodymap2_breast | 0 .00 RPM | 980 .46 RPM |
bodymap2_colon | 0 .00 RPM | 1470 .98 RPM |
bodymap2_heart | 0 .00 RPM | 195 .06 RPM |
bodymap2_kidney | 0 .00 RPM | 891 .95 RPM |
bodymap2_liver | 0 .00 RPM | 755 .38 RPM |
bodymap2_lung | 0 .00 RPM | 2935 .37 RPM |
bodymap2_lymph_node | 0 .00 RPM | 1199 .50 RPM |
bodymap2_ovary | 0 .02 RPM | 2319 .78 RPM |
bodymap2_prostate | 0 .00 RPM | 1597 .02 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 354 .63 RPM |
bodymap2_testis | 0 .06 RPM | 1156 .51 RPM |
bodymap2_thyroid | 0 .00 RPM | 1262 .62 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 2004 .26 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2349 |
Gorilla gorilla | retro_ggor_2338 |
Pongo abelii | retro_pabe_2862 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .02 RPM |
CEU_NA11843 | 0 .06 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .04 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .05 RPM |
FIN_HG00377 | 0 .03 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .04 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .02 RPM |
YRI_NA19223 | 0 .00 RPM |