RetrogeneDB ID: | retro_hsap_2605 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 3:12111942..12112860(+) | ||
Located in intron of: | ENSG00000157152 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000226642 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTG1 | ||
Ensembl ID: | ENSG00000184009 | ||
Aliases: | ACTG1, ACT, ACTG, BRWS2, DFNA20, DFNA26, HEL-176 | ||
Description: | actin, gamma 1 [Source:HGNC Symbol;Acc:144] |
Percent Identity: | 82.79 % |
Parental protein coverage: | 81.6 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV |
PIE.GIV.NWDDM.KIWHHTFY.ELRVAPEEH.VLLTEA..NPKANREKMTQIMFETFNT..MYVAIQA. | |
Retrocopy | PIERGIVINWDDMKKIWHHTFYSELRVAPEEHLVLLTEALVNPKANREKMTQIMFETFNTLSMYVAIQAM |
Parental | LSLYASGRTTGIV-MDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI |
LSLYASG.TTGIV.MD.GDGVTHTVPIYE..ALPHA.L.LDLAG.DLTDYLMKILTE..YSF.T.AE.EI | |
Retrocopy | LSLYASGCTTGIV>MDPGDGVTHTVPIYEA*ALPHAVLHLDLAGGDLTDYLMKILTEHSYSFNTMAEWEI |
Parental | VRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETT |
..DIKEK.CYVALDFEQEMATAASSSSLEKS.ELPD..VITIGN....C.EAL...SFLGMESCGIHETT | |
Retrocopy | LGDIKEKPCYVALDFEQEMATAASSSSLEKS*ELPDSLVITIGNKWSWCLEALL*LSFLGMESCGIHETT |
Parental | FNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS |
FNSIMKCDVDI.KDL.AN.VLS.GTTMYPGI..RMQK.ITALAPSTMKIKII.PPERKYSVWI..SILAS | |
Retrocopy | FNSIMKCDVDICKDLHANKVLSSGTTMYPGITNRMQKAITALAPSTMKIKIIVPPERKYSVWICSSILAS |
Parental | LSTFQQMWISKQEYD-ESGPSIVHRKCF |
LS.FQQMWI.KQEY....GPSIVHRKCF | |
Retrocopy | LSIFQQMWINKQEYN<QVGPSIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .04 RPM | 1801 .72 RPM |
bodymap2_adrenal | 0 .02 RPM | 1297 .48 RPM |
bodymap2_brain | 0 .00 RPM | 718 .46 RPM |
bodymap2_breast | 0 .00 RPM | 980 .46 RPM |
bodymap2_colon | 0 .00 RPM | 1470 .98 RPM |
bodymap2_heart | 0 .04 RPM | 195 .06 RPM |
bodymap2_kidney | 0 .00 RPM | 891 .95 RPM |
bodymap2_liver | 0 .00 RPM | 755 .38 RPM |
bodymap2_lung | 0 .00 RPM | 2935 .37 RPM |
bodymap2_lymph_node | 0 .00 RPM | 1199 .50 RPM |
bodymap2_ovary | 0 .04 RPM | 2319 .78 RPM |
bodymap2_prostate | 0 .09 RPM | 1597 .02 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 354 .63 RPM |
bodymap2_testis | 0 .00 RPM | 1156 .51 RPM |
bodymap2_thyroid | 0 .00 RPM | 1262 .62 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 2004 .26 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1756 |
Gorilla gorilla | retro_ggor_1825 |
Pongo abelii | retro_pabe_2308 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .05 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .04 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |