RetrogeneDB ID: | retro_fcat_377 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:45194719..45195403(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BETA-ACTIN | ||
Ensembl ID: | ENSFCAG00000026434 | ||
Aliases: | None | ||
Description: | Beta-actin [Source:UniProtKB/TrEMBL;Acc:Q9GLY0] |
Percent Identity: | 70.61 % |
Parental protein coverage: | 60.8 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | TTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC |
TTGIVMDSGD.VTHT.PI..GY.LP.AIL.LDLAG.DL.DYL.KI.TE.GYSFTTT.E.EIV.DI..KLC | |
Retrocopy | TTGIVMDSGDRVTHTMPIFVGYSLPCAILCLDLAGQDLMDYLLKIFTESGYSFTTTVEWEIVCDITDKLC |
Parental | YVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDV |
.V.L.FEQEMAT..SSSSLEKSYEL.D.Q.IT.G.....CP....Q..FLGMES.GIHE.TFN.IMKCD. | |
Retrocopy | *VNLYFEQEMATVVSSSSLEKSYELADSQLITMGKKWYHCPVGFSQLFFLGMESFGIHEITFNFIMKCDS |
Parental | DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI |
DI..DLY.NTVL.GGTTMYPG..DRMQK..T.L.PS.MKIK.IA.PE.KY.VWI.GSILA.L.TF.QM.I | |
Retrocopy | DIWMDLYSNTVLNGGTTMYPGVLDRMQKRSTTLEPSIMKIKVIASPECKYFVWIRGSILALLFTFKQM*I |
Parental | SKQEYDESGPSIVHRKCF |
SKQEY.E.GPS..H..CF | |
Retrocopy | SKQEYEELGPSTSHCRCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 616 .10 RPM |
SRP017611_kidney | 0 .00 RPM | 715 .43 RPM |
SRP017611_liver | 0 .00 RPM | 775 .36 RPM |