RetrogeneDB ID: | retro_cpor_260 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_11:23921552..23921839(-) | ||
Located in intron of: | ENSCPOG00000004121 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000004321 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.71 % |
Parental protein coverage: | 88.6 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVSIG-SLICNVGAGGPAPAAGAAPAGSPA |
A.IL.DDEVT..E.KI..L...A.VN.E.FW.GLFAKALANV.IG.S.IC..GAGG.A.AA.AA...S.. | |
Retrocopy | ACILLDDEVTFAEYKISTLVMVADVNAESFWRGLFAKALANVNIG<SSICSAGAGGLAQAAAAASGLS-- |
Parental | PTTTAAPAEEKKVEAKKEESEESDDDMGFGLF |
...TAAPA..KK.EAKK.ESE.S.DDMGFGLF | |
Retrocopy | --NTAAPA-KKKMEAKKKESEKSNDDMGFGLF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 136 .14 RPM |
SRP017611_kidney | 0 .00 RPM | 264 .86 RPM |
SRP017611_liver | 0 .00 RPM | 118 .09 RPM |
SRP040447_lung | 0 .00 RPM | 344 .84 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 858 .33 RPM |