RetrogeneDB ID: | retro_opri_645 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_2136:148495..148720(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSOPRG00000001163 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372] |
Percent Identity: | 59.74 % |
Parental protein coverage: | 67.54 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | NVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPAAAAAPAEEKKVEAKKEESEESDDD |
.V..FW.GL..K.LAN.N...LIC.VGAG.P.P.AGA.PAG.P.P...AA.AE.K..E.KKEE.EESDD. | |
Retrocopy | HVTLFWSGLLGKMLANSNNRRLICKVGAGRP-PEAGATPAGYPVPLVVAASAE-KEAETKKEEPEESDDN |
Parental | MGFGLFD |
.G..LFD | |
Retrocopy | RGLWLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |