RetrogeneDB ID: | retro_cpor_667 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_22:7868737..7869074(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000004321 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.66 % |
Parental protein coverage: | 97.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VSELACIYSALILHD---DEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVSIGSLICNVGAGGPAP |
VSEL.CIYSA.IL.D...D.VTVTEDK.NALIK.A.VNV..FW.GLFAKALA.V.I.SL.C.VG..GPAP | |
Retrocopy | VSELTCIYSAFILRDNEVDQVTVTEDKLNALIKMACVNVKRFWSGLFAKALASVNIRSLTCSVGTRGPAP |
Parental | -AAGAA-PAGSPAPTTTAAPAEEKKVEAKKEESEESDDDMGFGLFD |
..AGAA..AG.P.P...AAPA..K...AKK.ESEESD..M.F...D | |
Retrocopy | <SAGAA<TAGGPSP-SAAAPAKNKTAGAKKQESEESDNNMCFSRLD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 136 .14 RPM |
SRP017611_kidney | 0 .00 RPM | 264 .86 RPM |
SRP017611_liver | 0 .00 RPM | 118 .09 RPM |
SRP040447_lung | 0 .00 RPM | 344 .84 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 858 .33 RPM |