RetrogeneDB ID: | retro_opri_530 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_153:183938..184266(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSOPRG00000001163 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372] |
Percent Identity: | 71.17 % |
Parental protein coverage: | 96.49 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MASVSELACIYSALILHDDEVTVTEDKINAL-IKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPA |
MA.VSEL.CI.SALILH.D.VT..EDKIN.L..KAA..NVE.F..GLFAKALA.VNI..LICNV.AGG.A | |
Retrocopy | MATVSELTCICSALILHNDRVTIMEDKINTL>LKAADINVELF*SGLFAKALASVNIRNLICNVRAGGLA |
Parental | PAAGAAPAGGPAPAAAAAPAEEKKVEAKKEESEESDDDMGF |
.AAGAAP..GPAP..AAA.AE..KVE.KK..SEESDD.MGF | |
Retrocopy | LAAGAAPVEGPAPTTAAAAAEQ-KVEVKKQKSEESDDNMGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |