Parental gene:

RPLP1, ENSOPRG00000001163

Aliases:None
Description:ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372]
Organism:Southern American pika (Ochotona princeps)
Coordinates:GeneScaffold_2368:66059..67351(+)


>ENSOPRG00000001163
ATGGCCTCCGTCTCCGAGCTCGCCTGCATCTACTCGGCCCTGATTCTGCACGACGACGAGGTGACCGTCACGGAGGACAA
GATCAACGCCCTCATCAAGGCGGCCGGCGTCAACGTGGAGCCCTTCTGGCCTGGCTTGTTCGCCAAGGCCCTGGCCAATG
TCAACATCGGCAGCCTCATCTGCAACGTCGGGGCTGGTGGACCTGCTCCCGCAGCAGGTGCTGCCCCCGCGGGAGGCCCT
GCGCCCGCTGCGGCTGCTGCTCCAGCTGAGGAGAAGAAGGTGGAGGCCAAGAAGGAAGAGTCGGAGGAGTCTGACGACGA
CATGGGCTTCGGGCTGTTTGACTAG

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014251 possible_ortholog 20 retrogenes
Bos taurus ENSBTAG00000018320 possible_ortholog 4 retrogenes
Choloepus hoffmanni ENSCHOG00000005944 possible_ortholog 10 retrogenes
Callithrix jacchus ENSCJAG00000032919 possible_ortholog 19 retrogenes
Cavia porcellus ENSCPOG00000004321 possible_ortholog 6 retrogenes
Dasypus novemcinctus ENSDNOG00000014224 possible_ortholog 26 retrogenes
Equus caballus ENSECAG00000008542 possible_ortholog 4 retrogenes
Felis catus ENSFCAG00000032037 possible_ortholog 23 retrogenes
Gorilla gorilla ENSGGOG00000003980 possible_ortholog 13 retrogenes
Latimeria chalumnae ENSLACG00000012630 ortholog_one2many 1 retrogene
Loxodonta africana ENSLAFG00000032060 possible_ortholog 3 retrogenes
Macropus eugenii ENSMEUG00000015277 possible_ortholog 6 retrogenes
Macropus eugenii ENSMEUG00000015282 possible_ortholog 2 retrogenes
Myotis lucifugus ENSMLUG00000010542 possible_ortholog 33 retrogenes
Macaca mulatta ENSMMUG00000014888 possible_ortholog 7 retrogenes
Monodelphis domestica ENSMODG00000009209 possible_ortholog 1 retrogene
Monodelphis domestica ENSMODG00000009218 possible_ortholog 4 retrogenes
Mustela putorius furo ENSMPUG00000000204 possible_ortholog 13 retrogenes
Mustela putorius furo ENSMPUG00000017096 possible_ortholog 2 retrogenes
Mus musculus ENSMUSG00000007892 possible_ortholog 6 retrogenes
Oryctolagus cuniculus ENSOCUG00000015087 ortholog_one2one 8 retrogenes
Pongo abelii ENSPPYG00000006601 possible_ortholog 5 retrogenes
Pan troglodytes ENSPTRG00000007228 possible_ortholog 1 retrogene
Rattus norvegicus ENSRNOG00000011955 possible_ortholog 6 retrogenes
Rattus norvegicus ENSRNOG00000013874 possible_ortholog 3 retrogenes
Sus scrofa ENSSSCG00000004970 possible_ortholog 16 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000027893 possible_ortholog 8 retrogenes
Tarsius syrichta ENSTSYG00000013927 possible_ortholog 1 retrogene
Tursiops truncatus ENSTTRG00000013656 possible_ortholog 20 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_opri_38 67.42 77.19
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2. retro_opri_96 71.17 96.49
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3. retro_opri_130 78.70 93.86
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4. retro_opri_214 56.58 65.79
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5. retro_opri_245 53.45 100.00
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6. retro_opri_530 71.17 96.49
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7. retro_opri_645 59.74 67.54
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8. retro_opri_768 78.70 93.86
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9. retro_opri_784 53.45 100.00
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10. retro_opri_972 56.58 65.79
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11. retro_opri_1010 67.42 77.19
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Download FASTA sequences of all ENSOPRG00000001163 retrocopies