RetrogeneDB ID: | retro_sscr_323 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 13:89276604..89276942(+) | ||
Located in intron of: | ENSSSCG00000011666 | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000011667 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000004970 | ||
Aliases: | None | ||
Description: | 60S acidic ribosomal protein P1 [Source:RefSeq peptide;Acc:NP_001123436] |
Percent Identity: | 75.65 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAP |
MAS.SELACIYSALILHD.EVTV.ED.INALIKAAGVNVEPFWPGLFAK.LANVNI.SLICNVG...... | |
Retrocopy | MASISELACIYSALILHDNEVTVMED-INALIKAAGVNVEPFWPGLFAKTLANVNIWSLICNVGTXXXXX |
Parental | AAGAAPAGGPAPATTAA-PAEEKKVEAKKEESEESDDDMGFGLFD |
.............TTAA.PAEEKKVEAKKEESEESDDDM.FGL.D | |
Retrocopy | XXXXXXXXXXXXXTTAA<PAEEKKVEAKKEESEESDDDMVFGLSD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .27 RPM | 1617 .86 RPM |
SRP014902_testis | 0 .28 RPM | 725 .90 RPM |
SRP018288_heart | 0 .03 RPM | 643 .73 RPM |
SRP018288_kidney | 0 .00 RPM | 656 .64 RPM |
SRP018288_liver | 0 .00 RPM | 457 .02 RPM |
SRP018288_lung | 0 .10 RPM | 934 .87 RPM |
SRP018856_adipose | 0 .15 RPM | 1028 .28 RPM |
SRP035408_brain | 0 .03 RPM | 921 .91 RPM |
SRP035408_liver | 0 .09 RPM | 904 .63 RPM |