RetrogeneDB ID: | retro_dnov_1660 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_258458:101..327(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDNOG00000024706 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000014224 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.95 % |
Parental protein coverage: | 65.79 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKAL-ANISIGSLICNVGAGGPA |
.AS.SELACIY.ALILHDDEVT..EDKI.ALIKA.G.NVEPFW.GLFAKAL.A..SIGSLICNVGAGGPA | |
Retrocopy | IASISELACIYLALILHDDEVTDMEDKIGALIKAPGMNVEPFWSGLFAKAL>ADVSIGSLICNVGAGGPA |
Parental | PAAGAA |
...G.A | |
Retrocopy | LVGGPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .19 RPM | 855 .66 RPM |
SRP012922_cerebellum | 0 .69 RPM | 408 .28 RPM |
SRP012922_heart | 0 .00 RPM | 468 .47 RPM |
SRP012922_kidney | 0 .27 RPM | 1049 .46 RPM |
SRP012922_liver | 0 .00 RPM | 483 .62 RPM |
SRP012922_lung | 0 .46 RPM | 1291 .44 RPM |
SRP012922_quadricep_muscle | 0 .17 RPM | 1577 .15 RPM |
SRP012922_spleen | 0 .34 RPM | 1258 .96 RPM |