RetrogeneDB ID: | retro_dnov_746 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_104082:4064..4399(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDNOG00000019795 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000014224 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.76 % |
Parental protein coverage: | 98.25 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ASVSELACIYSALILHDDEVTVTEDKINALIK-AAGVNVEPFWPGLFAKALANISIGSLICNVGAGGPAP |
AS.S.LACIYSALILHDDE.T..E.K.NAL.K.AA.VNVE.FWPGLF.KALA..S.GSLICNVGAG.PAP | |
Retrocopy | ASASKLACIYSALILHDDEITIMEYKTNALLK<AASVNVESFWPGLFVKALASVSTGSLICNVGAGRPAP |
Parental | AAGAAPAGGPAPTTTAAPAEEKKVEAKKEESEESDDDMGFGLF |
.AGAAP.G..APT.TAA.A.EKKVEAKKEESEE.DDDMGFGLF | |
Retrocopy | GAGAAPSGSLAPTATAASAKEKKVEAKKEESEELDDDMGFGLF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 855 .66 RPM |
SRP012922_cerebellum | 0 .00 RPM | 408 .28 RPM |
SRP012922_heart | 0 .00 RPM | 468 .47 RPM |
SRP012922_kidney | 0 .00 RPM | 1049 .46 RPM |
SRP012922_liver | 0 .00 RPM | 483 .62 RPM |
SRP012922_lung | 0 .00 RPM | 1291 .44 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 1577 .15 RPM |
SRP012922_spleen | 0 .00 RPM | 1258 .96 RPM |