RetrogeneDB ID: | retro_shar_234 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL834724.1:2773923..2774264(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSSHAG00000014818 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372] |
Percent Identity: | 53.39 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MASVSELACIYSALILHDD-EVTVTEDKI-NALIKAAGVNVEPFWPGLFAKALANIDIGSLI-CNIGVGG |
MA.VSEL..IY..LILH....V.V.E.KI...LIKAAGVNVEPF..GLFAK.LA..D.G.LI..NI.VG. | |
Retrocopy | MALVSELP-IYLLLILHSM<DVIVREYKI>YILIKAAGVNVEPFLFGLFAKVLASNDNGNLI<SNIRVGV |
Parental | APPPAGAAPTGGAAPAAGAAPAEEKKEEVKKEESEE-SDDDMGFGLFD |
....A.A.P.GGAA.A...................E.SDDDMGF.LFD | |
Retrocopy | TALAADATPSGGAASAEEKLILISSLQQRQHQYQKEESDDDMGFVLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |